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CCT6P1 chaperonin containing TCP1 subunit 6 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 643253, updated on 10-Oct-2023

Summary

Official Symbol
CCT6P1provided by HGNC
Official Full Name
chaperonin containing TCP1 subunit 6 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33094
See related
Ensembl:ENSG00000291124 AllianceGenome:HGNC:33094
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCT6-5P; CCT6AP1
Expression
Ubiquitous expression in testis (RPKM 7.0), bone marrow (RPKM 6.7) and 25 other tissues See more
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Genomic context

See CCT6P1 in Genome Data Viewer
Location:
7q11.21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65751105..65763675)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66973233..66985797)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (65216092..65228662)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene glutamate metabotropic receptor 8 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:65103805-65104363 Neighboring gene long intergenic non-protein coding RNA 3006 Neighboring gene integrator complex subunit 4 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 6763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26074 Neighboring gene small nucleolar RNA, H/ACA box 15B-2 Neighboring gene small nucleolar RNA, H/ACA box 22 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65234206-65234829 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:65234830-65235452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65240377-65240878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65240879-65241378 Neighboring gene general transcription factor IIi pseudogene 5 Neighboring gene RNA, U6 small nuclear 912, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1
  • chaperonin containing TCP1, subunit 6A (zeta 1) pseudogene 1
  • chaperonin containing TCP1, subunit 6A pseudogene

Clone Names

  • DKFZp779B0634

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003110.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BC052238
    Related
    ENST00000686689.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    65751105..65763675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    66973233..66985797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)