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TUBBP5 tubulin beta pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 643224, updated on 17-Sep-2024

Summary

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Official Symbol
TUBBP5provided by HGNC
Official Full Name
tubulin beta pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:23674
See related
AllianceGenome:HGNC:23674
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.9), adrenal (RPKM 1.5) and 19 other tissues See more
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Genomic context

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See TUBBP5 in Genome Data Viewer
Location:
9q34.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (138150113..138177433)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (150415615..150442914)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (141044565..141071885)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 B Neighboring gene uncharacterized LOC101928786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:140968134-140969031 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:140991711-140992212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140995762-140996262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:140999073-140999830 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:141038812-141038998 Neighboring gene IL9R pseudogene 1 Neighboring gene uncharacterized LOC101928932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:141091719-141092323 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:141111343-141111956 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:141113183-141113794 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:141121802-141122368 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:141122369-141122934 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:141122935-141123500 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:141123501-141124066 Neighboring gene uncharacterized LOC124902321 Neighboring gene family with sequence similarity 157 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A cascade of complex subtelomeric duplications during the evolution of the hominoid and Old World monkey genomes. van Geel M, et al. Am J Hum Genet, 2002 Jan. PMID 11731935, Free PMC Article
  2. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. Cloutier P, et al. PLoS Genet, 2013. PMID 23349634, Free PMC Article
  3. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • HSA9q34 beta-tubulin 4Q (TUBB4Q) pseudogene
  • tubulin, beta 8 pseudogene
  • tubulin, beta polypeptide pseudogene 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027156.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591424

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    138150113..138177433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    150415615..150442914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002336.2: Suppressed sequence

    Description
    NG_002336.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

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