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S100A9 S100 calcium binding protein A9 [ Homo sapiens (human) ]

Gene ID: 6280, updated on 5-Dec-2021

Summary

Official Symbol
S100A9provided by HGNC
Official Full Name
S100 calcium binding protein A9provided by HGNC
Primary source
HGNC:HGNC:10499
See related
Ensembl:ENSG00000163220 MIM:123886
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIF; NIF; P14; CAGB; CFAG; CGLB; L1AG; LIAG; MRP14; 60B8AG; MAC387; S100-A9
Summary
The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand calcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide range of cells, and involved in the regulation of a number of cellular processes such as cell cycle progression and differentiation. S100 genes include at least 13 members which are located as a cluster on chromosome 1q21. This protein may function in the inhibition of casein kinase and altered expression of this protein is associated with the disease cystic fibrosis. This antimicrobial protein exhibits antifungal and antibacterial activity. [provided by RefSeq, Nov 2014]
Expression
Biased expression in bone marrow (RPKM 7440.5), esophagus (RPKM 5956.4) and 1 other tissue See more
Orthologs
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Genomic context

See S100A9 in Genome Data Viewer
Location:
1q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (153357854..153361023)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (153330330..153333499)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene peptidoglycan recognition protein 3 Neighboring gene peptidoglycan recognition protein 4 Neighboring gene RNA, U6 small nuclear 160, pseudogene Neighboring gene S100 calcium binding protein A12 Neighboring gene lysosomal protein transmembrane 4 beta pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Replication interactions

Interaction Pubs
Clinical HIV-1 infection decreases S100A9 in blood plasma of patients with symptomatic neurocognitive disorders PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RAGE receptor binding TAS
Traceable Author Statement
more info
PubMed 
enables Toll-like receptor 4 binding TAS
Traceable Author Statement
more info
PubMed 
enables antioxidant activity IEA
Inferred from Electronic Annotation
more info
 
enables arachidonic acid binding TAS
Traceable Author Statement
more info
PubMed 
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables calcium ion binding TAS
Traceable Author Statement
more info
PubMed 
enables calcium-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables microtubule binding TAS
Traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
involved_in activation of cysteine-type endopeptidase activity involved in apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IDA
Inferred from Direct Assay
more info
PubMed 
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in astrocyte development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in autocrine signaling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in autophagy IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cell-cell signaling TAS
Traceable Author Statement
more info
PubMed 
involved_in cellular oxidant detoxification IEA
Inferred from Electronic Annotation
more info
 
involved_in chronic inflammatory response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in defense response to bacterium TAS
Traceable Author Statement
more info
PubMed 
involved_in defense response to fungus TAS
Traceable Author Statement
more info
PubMed 
involved_in inflammatory response TAS
Traceable Author Statement
more info
PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in leukocyte migration involved in inflammatory response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in leukocyte migration involved in inflammatory response IDA
Inferred from Direct Assay
more info
PubMed 
involved_in modulation of process of other organism IDA
Inferred from Direct Assay
more info
PubMed 
involved_in neutrophil aggregation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in neutrophil aggregation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in neutrophil chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in neutrophil chemotaxis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in peptidyl-cysteine S-nitrosylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in peptidyl-cysteine S-trans-nitrosylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity TAS
Traceable Author Statement
more info
PubMed 
involved_in positive regulation of cell growth TAS
Traceable Author Statement
more info
PubMed 
involved_in positive regulation of inflammatory response IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of intrinsic apoptotic signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of neuron projection development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of cytoskeleton organization TAS
Traceable Author Statement
more info
PubMed 
involved_in regulation of integrin biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in response to lipopolysaccharide IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in sequestering of zinc ion TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
protein S100-A9
Names
MRP-14
calgranulin B
calprotectin L1H subunit
leukocyte L1 complex heavy chain
migration inhibitory factor-related protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_002965.4NP_002956.1  protein S100-A9

    See identical proteins and their annotated locations for NP_002956.1

    Status: REVIEWED

    Source sequence(s)
    BC047681, X06233
    Consensus CDS
    CCDS1036.1
    UniProtKB/Swiss-Prot
    P06702
    Related
    ENSP00000357727.3, ENST00000368738.4
    Conserved Domains (1) summary
    cd05030
    Location:694
    calgranulins; Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    153357854..153361023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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