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TRAPPC6A trafficking protein particle complex subunit 6A [ Canis lupus familiaris (dog) ]

Gene ID: 612313, updated on 17-Aug-2024

Summary

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Official Symbol
TRAPPC6Aprovided by VGNC
Official Full Name
trafficking protein particle complex subunit 6Aprovided by VGNC
Primary source
VGNC:VGNC:47785
See related
Ensembl:ENSCAFG00845005834
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TRAPPC6A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (110858803..110869671)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (109810396..109821266)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (111038213..111049087)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (110534395..110545247)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (110169030..110179896)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3 like 2 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 3 Neighboring gene NTPase KAP family P-loop domain containing 1 Neighboring gene protein phosphatase 1 regulatory subunit 37 Neighboring gene gem nuclear organelle associated protein 7 Neighboring gene zinc finger protein 296

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cis-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 6A
Names
trafficking protein particle complex 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    110858803..110869671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038656684.1 → XP_038512612.1  trafficking protein particle complex subunit 6A isoform X1

    Conserved Domains (1) summary
    cd14944
    Location:3 → 179
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  2. XM_038656686.1 → XP_038512614.1  trafficking protein particle complex subunit 6A isoform X3

    Conserved Domains (1) summary
    cd14944
    Location:3 → 141
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  3. XM_038656685.1 → XP_038512613.1  trafficking protein particle complex subunit 6A isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDZ2, A0A8C0S707, A0A8I3RSX1
    Related
    ENSCAFP00845008038.1, ENSCAFT00845010336.1
    Conserved Domains (1) summary
    cd14944
    Location:3 → 157
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    110534395..110545247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038467881.1 → XP_038323809.1  trafficking protein particle complex subunit 6A isoform X1

    Conserved Domains (1) summary
    cd14944
    Location:3 → 179
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  2. XM_038467883.1 → XP_038323811.1  trafficking protein particle complex subunit 6A isoform X3

    Conserved Domains (1) summary
    cd14944
    Location:3 → 141
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  3. XM_038467882.1 → XP_038323810.1  trafficking protein particle complex subunit 6A isoform X2

    Conserved Domains (1) summary
    cd14944
    Location:3 → 157
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    110169030..110179896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038592877.1 → XP_038448805.1  trafficking protein particle complex subunit 6A isoform X1

    Conserved Domains (1) summary
    cd14944
    Location:3 → 179
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  2. XM_038592879.1 → XP_038448807.1  trafficking protein particle complex subunit 6A isoform X3

    Conserved Domains (1) summary
    cd14944
    Location:3 → 141
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  3. XM_038592878.1 → XP_038448806.1  trafficking protein particle complex subunit 6A isoform X2

    Conserved Domains (1) summary
    cd14944
    Location:3 → 157
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    111038213..111049087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038528598.1 → XP_038384526.1  trafficking protein particle complex subunit 6A isoform X1

    Conserved Domains (1) summary
    cd14944
    Location:3 → 179
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  2. XM_038528600.1 → XP_038384528.1  trafficking protein particle complex subunit 6A isoform X3

    Conserved Domains (1) summary
    cd14944
    Location:3 → 141
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  3. XM_038528599.1 → XP_038384527.1  trafficking protein particle complex subunit 6A isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDZ2, A0A8C0S707, A0A8I3RSX1
    Conserved Domains (1) summary
    cd14944
    Location:3 → 157
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    109810396..109821266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005616452.4 → XP_005616509.2  trafficking protein particle complex subunit 6A isoform X1

    Conserved Domains (1) summary
    cd14944
    Location:3 → 179
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  2. XM_005616454.4 → XP_005616511.2  trafficking protein particle complex subunit 6A isoform X3

    Conserved Domains (1) summary
    cd14944
    Location:3 → 141
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex

  3. XM_005616453.4 → XP_005616510.2  trafficking protein particle complex subunit 6A isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDZ2, A0A8C0S707, A0A8I3RSX1
    Conserved Domains (1) summary
    cd14944
    Location:3 → 157
    TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex
Nucleotide Protein
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