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BEND3 BEN domain containing 3 [ Homo sapiens (human) ]

Gene ID: 57673, updated on 5-Sep-2021

Summary

Official Symbol
BEND3provided by HGNC
Official Full Name
BEN domain containing 3provided by HGNC
Primary source
HGNC:HGNC:23040
See related
Ensembl:ENSG00000178409 MIM:616374
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA1553
Expression
Ubiquitous expression in stomach (RPKM 1.1), testis (RPKM 1.1) and 25 other tissues See more
Orthologs
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Genomic context

See BEND3 in Genome Data Viewer
Location:
6q21
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (107065182..107115515, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (107386386..107436719, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene CD24 molecule Neighboring gene mitochondrial transcription rescue factor 1 Neighboring gene RNA, U6 small nuclear 1299, pseudogene Neighboring gene decaprenyl diphosphate synthase subunit 2 Neighboring gene ribosomal protein S24 pseudogene 12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1553

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables rDNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables rDNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in heterochromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
BEN domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080450.3NP_001073919.1  BEN domain-containing protein 3

    See identical proteins and their annotated locations for NP_001073919.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AB046773, AL355586, BC131628
    Consensus CDS
    CCDS34507.1
    UniProtKB/Swiss-Prot
    Q5T5X7
    Related
    ENSP00000411268.2, ENST00000429433.3
    Conserved Domains (1) summary
    smart01025
    Location:737816
    BEN; The BEN domain is found in diverse animal proteins
  2. NM_001367314.1NP_001354243.1  BEN domain-containing protein 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AL355586
    Related
    ENSP00000358038.1, ENST00000369042.6
    Conserved Domains (1) summary
    smart01025
    Location:737816
    BEN; The BEN domain is found in diverse animal proteins

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    107065182..107115515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011536005.3XP_011534307.1  BEN domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011534307.1

    UniProtKB/Swiss-Prot
    Q5T5X7
    Conserved Domains (1) summary
    smart01025
    Location:737816
    BEN; The BEN domain is found in diverse animal proteins
  2. XM_005267080.4XP_005267137.1  BEN domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005267137.1

    UniProtKB/Swiss-Prot
    Q5T5X7
    Conserved Domains (1) summary
    smart01025
    Location:737816
    BEN; The BEN domain is found in diverse animal proteins
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