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Fbxo3 F-box protein 3 [ Mus musculus (house mouse) ]

Gene ID: 57443, updated on 5-Aug-2018

Summary

Official Symbol
Fbxo3provided by MGI
Official Full Name
F-box protein 3provided by MGI
Primary source
MGI:MGI:1929084
See related
Ensembl:ENSMUSG00000027180 Vega:OTTMUSG00000014914
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fba; AI046358; 1200002G09Rik; 1700026K02Rik
Expression
Ubiquitous expression in bladder adult (RPKM 12.3), liver E14 (RPKM 12.0) and 28 other tissues See more
Orthologs

Genomic context

See Fbxo3 in Genome Data Viewer
Location:
2; 2 E2
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (104027799..104063237)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (103867956..103903394)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39896 Neighboring gene LIM domain only 2 Neighboring gene predicted gene, 38515 Neighboring gene RIKEN cDNA 4931422A03 gene Neighboring gene CD59b antigen Neighboring gene CD59a antigen

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
F-box only protein 3
Names
F-box protein FBA

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355504.1NP_001342433.1  F-box only protein 3 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' end compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    BX640578
    Conserved Domains (2) summary
    smart00860
    Location:91219
    SMI1_KNR4; SMI1 / KNR4 family
    cl01119
    Location:249374
    DUF525; ApaG domain
  2. NM_001355505.1NP_001342434.1  F-box only protein 3 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (4) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    BX640578
    Conserved Domains (3) summary
    smart00860
    Location:121249
    SMI1_KNR4; SMI1 / KNR4 family
    pfam12937
    Location:1357
    F-box-like; F-box-like
    cl01119
    Location:279404
    DUF525; ApaG domain
  3. NM_001355506.1NP_001342435.1  F-box only protein 3 isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an alternate in-frame exon in the 5' end and differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (5) lacks an alternate internal segment and has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    BX640578
    Conserved Domains (2) summary
    smart00860
    Location:91219
    SMI1_KNR4; SMI1 / KNR4 family
    cl01119
    Location:249374
    DUF525; ApaG domain
  4. NM_001355507.1NP_001342436.1  F-box only protein 3 isoform 6

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) uses an alternate splice junction in the 3' end compared to variant 1, that causes a frameshift. The resulting isoform (6) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AK085686, BX640578
    Conserved Domains (3) summary
    smart00860
    Location:121249
    SMI1_KNR4; SMI1 / KNR4 family
    pfam12937
    Location:1357
    F-box-like
    cl01119
    Location:279358
    DUF525; ApaG domain
  5. NM_020593.2NP_065618.1  F-box only protein 3 isoform 2

    See identical proteins and their annotated locations for NP_065618.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AF233226, AK006392, BY105498
    Consensus CDS
    CCDS16485.1
    UniProtKB/Swiss-Prot
    Q9DC63
    UniProtKB/TrEMBL
    Q9CVV6
    Related
    ENSMUSP00000099625.3, OTTMUSP00000015846, ENSMUST00000102565.3, OTTMUST00000035428
    Conserved Domains (3) summary
    pfam09346
    Location:121249
    SMI1_KNR4; SMI1 / KNR4 family (SUKH-1)
    pfam12937
    Location:1357
    F-box-like; F-box-like
    cl01119
    Location:279404
    DUF525; Protein of unknown function (DUF525)
  6. NM_212433.1NP_997598.1  F-box only protein 3 isoform 1

    See identical proteins and their annotated locations for NP_997598.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AK029594, AK049870, BB470024, BE980708, BY105498
    Consensus CDS
    CCDS16484.1
    UniProtKB/Swiss-Prot
    Q9DC63
    UniProtKB/TrEMBL
    Q8CDU1
    Related
    ENSMUSP00000028603.3, OTTMUSP00000015845, ENSMUST00000028603.9, OTTMUST00000035427
    Conserved Domains (3) summary
    pfam09346
    Location:121249
    SMI1_KNR4; SMI1 / KNR4 family (SUKH-1)
    pfam12937
    Location:1357
    F-box-like; F-box-like
    cl01119
    Location:279404
    DUF525; Protein of unknown function (DUF525)

RNA

  1. NR_149726.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks an alternate internal exon and differs in the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK150097, BX640578

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    104027799..104063237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499956.2XP_006500019.1  F-box only protein 3 isoform X1

    Related
    ENSMUSP00000106765.1, OTTMUSP00000015847, ENSMUST00000111135.7, OTTMUST00000035429
    Conserved Domains (3) summary
    smart00860
    Location:121249
    SMI1_KNR4; SMI1 / KNR4 family
    pfam12937
    Location:1357
    F-box-like; F-box-like
    cl01119
    Location:279404
    DUF525; ApaG domain
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