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TM9SF3 transmembrane 9 superfamily member 3 [ Homo sapiens (human) ]

Gene ID: 56889, updated on 7-Oct-2018

Summary

Official Symbol
TM9SF3provided by HGNC
Official Full Name
transmembrane 9 superfamily member 3provided by HGNC
Primary source
HGNC:HGNC:21529
See related
Ensembl:ENSG00000077147 MIM:616872; Vega:OTTHUMG00000018834
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMBP; EP70-P-iso
Expression
Ubiquitous expression in stomach (RPKM 69.3), colon (RPKM 62.0) and 25 other tissues See more
Orthologs

Genomic context

See TM9SF3 in Genome Data Viewer
Location:
10q24.1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 10 NC_000010.11 (96518110..96587052, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (98277867..98346809, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene oligodendrocytic myelin paranodal and inner loop protein Neighboring gene tolloid like 2 Neighboring gene nucleophosmin 1 pseudogene 26 Neighboring gene uncharacterized LOC105378443 Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene RNA, 5S ribosomal pseudogene 324

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transmembrane 9 superfamily member 3
Names
SM-11044 binding protein
dinucleotide oxidase disulfide thiol exchanger 3 superfamily member 3
endomembrane protein emp70 precursor isolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020123.3NP_064508.3  transmembrane 9 superfamily member 3 precursor

    See identical proteins and their annotated locations for NP_064508.3

    Status: VALIDATED

    Source sequence(s)
    AL138765, BC136788
    Consensus CDS
    CCDS7450.1
    UniProtKB/Swiss-Prot
    Q9HD45
    UniProtKB/TrEMBL
    A0A024QYS2
    Related
    ENSP00000360184.4, OTTHUMP00000020173, ENST00000371142.8, OTTHUMT00000049610
    Conserved Domains (1) summary
    pfam02990
    Location:58527
    EMP70; Endomembrane protein 70

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p12 Primary Assembly

    Range
    96518110..96587052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539977.1XP_011538279.1  transmembrane 9 superfamily member 3 isoform X2

    Conserved Domains (1) summary
    pfam02990
    Location:75531
    EMP70; Endomembrane protein 70
  2. XM_011539976.2XP_011538278.1  transmembrane 9 superfamily member 3 isoform X1

    Conserved Domains (1) summary
    pfam02990
    Location:75545
    EMP70; Endomembrane protein 70
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