Tm9sf3 transmembrane 9 superfamily member 3 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tm9sf3provided by MGI
Official Full Name: transmembrane 9 superfamily member 3provided by MGI
Primary source: MGI:MGI:1914262
See related: Ensembl:ENSMUSG00000025016 AllianceGenome:MGI:1914262
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Smbp; mKIAA4036; 1810073M23Rik; 2810031D16Rik
Summary: Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in placenta adult (RPKM 39.6), bladder adult (RPKM 34.8) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 19; 19 C3

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	19	NC_000085.7 (41199281..41252443, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	19	NC_000085.6 (41210842..41264004, complement)

Chromosome 19 - NC_000085.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AI413748 (e-PCR)
- UniSTS:160839

AA957351 (e-PCR)
- UniSTS:226207

RH135879 (e-PCR)
- UniSTS:209877

AW146116 (e-PCR)
- UniSTS:181237

AW549777 (e-PCR)
- UniSTS:181238

Homology

Homologs of the Tm9sf3 gene: The Tm9sf3 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, A.thaliana, rice, and frog.
Orthologs from Annotation Pipeline: 491 organisms have orthologs with human gene Tm9sf3
Orthologs

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in protein localization to membrane	IBA Inferred from Biological aspect of Ancestor more info	PubMed

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info	PubMed

General protein information

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Preferred Names: transmembrane 9 superfamily member 3

Names: SM-11044 binding protein; transmembrane protein 9 superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_133352.2 → NP_579930.1 transmembrane 9 superfamily member 3 precursor

See identical proteins and their annotated locations for NP_579930.1

Status: VALIDATED

Source sequence(s)

AC133099, AF269151, CA529050

Consensus CDS

CCDS29808.1

UniProtKB/Swiss-Prot

Q9ET30

UniProtKB/TrEMBL

A0A6P5P0G9, A0A8C6MWL9

Related

ENSMUSP00000158318.2, ENSMUST00000237871.2

Conserved Domains (1) summary

pfam02990
Location:56 → 525

EMP70; Endomembrane protein 70

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000085.7 Reference GRCm39 C57BL/6J

Range

41199281..41252443 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_178146.2: Suppressed sequence

Description

NM_178146.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.