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Tm9sf3 transmembrane 9 superfamily member 3 [ Mus musculus (house mouse) ]

Gene ID: 107358, updated on 15-Apr-2019

Summary

Official Symbol
Tm9sf3provided by MGI
Official Full Name
transmembrane 9 superfamily member 3provided by MGI
Primary source
MGI:MGI:1914262
See related
Ensembl:ENSMUSG00000025016
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Smbp; AI115521; AI413748; AW146116; AW549777; mKIAA4036; 1810073M23Rik; 2810031D16Rik
Expression
Ubiquitous expression in placenta adult (RPKM 39.6), bladder adult (RPKM 34.8) and 28 other tissues See more
Orthologs

Genomic context

See Tm9sf3 in Genome Data Viewer
Location:
19; 19 C3
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (41210842..41264004, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (41285332..41338494, complement)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene deoxynucleotidyltransferase, terminal Neighboring gene oligodendrocytic myelin paranodal and inner loop protein Neighboring gene tolloid-like 2 Neighboring gene predicted gene, 46651 Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene predicted gene, 33951

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA4036

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transmembrane 9 superfamily member 3
Names
SM-11044 binding protein
transmembrane protein 9 superfamily member 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133352.2NP_579930.1  transmembrane 9 superfamily member 3 precursor

    See identical proteins and their annotated locations for NP_579930.1

    Status: VALIDATED

    Source sequence(s)
    AC133099, AF269151, CA529050
    Consensus CDS
    CCDS29808.1
    UniProtKB/Swiss-Prot
    Q9ET30
    Related
    ENSMUSP00000158318.1, ENSMUST00000237871.1
    Conserved Domains (1) summary
    pfam02990
    Location:56525
    EMP70; Endomembrane protein 70

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

    Range
    41210842..41264004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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