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SLC7A10 solute carrier family 7 member 10 [ Homo sapiens (human) ]

Gene ID: 56301, updated on 1-Mar-2024

Summary

Official Symbol
SLC7A10provided by HGNC
Official Full Name
solute carrier family 7 member 10provided by HGNC
Primary source
HGNC:HGNC:11058
See related
Ensembl:ENSG00000130876 MIM:607959; AllianceGenome:HGNC:11058
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ASC1; asc-1; HASC-1
Summary
SLC7A10, in association with 4F2HC (SLC3A2; MIM 158070), mediates high-affinity transport of D-serine and several other neutral amino acids (Nakauchi et al., 2000 [PubMed 10863037]).[supplied by OMIM, Mar 2008]
Expression
Broad expression in fat (RPKM 24.7), ovary (RPKM 10.1) and 14 other tissues See more
Orthologs
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Genomic context

See SLC7A10 in Genome Data Viewer
Location:
19q13.11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (33208664..33225850, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (35727305..35744598, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (33699570..33716756, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene WD repeat domain 88 Neighboring gene uncharacterized LOC124904691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14440 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51151 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33666856-33667620 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10492 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14442 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14443 Neighboring gene tRNA-Thr (anticodon AGT) 1-3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14444 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51179 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51187 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33698023-33698524 Neighboring gene LDL receptor related protein 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:33723689-33723856 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14445 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10493 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33739547-33740048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33741253-33742136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33742137-33743019 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33764565-33765125 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33765149-33765716 Neighboring gene HNF1 motif-containing MPRA enhancer 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33769447-33770004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33777434-33778421 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33782467-33783050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33784308-33785258 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10495 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10496 Neighboring gene CEBPA divergent transcript Neighboring gene CCAAT enhancer binding protein alpha

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ20839

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables L-amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables L-serine transmembrane transporter activity TAS
Traceable Author Statement
more info
PubMed 
enables neutral L-amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables neutral L-amino acid transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in D-alanine transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in D-serine transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in L-alpha-amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in L-serine transport IEA
Inferred from Electronic Annotation
more info
 
involved_in amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in amino acid transport TAS
Traceable Author Statement
more info
PubMed 
involved_in glycine transport IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of brown fat cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in neutral amino acid transport IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of synaptic transmission, glycinergic IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
PubMed 
located_in plasma membrane NAS
Non-traceable Author Statement
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
asc-type amino acid transporter 1
Names
solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10
solute carrier family 7, (cationic amino acid transporter, y+ system) member 10
solute carrier family 7, (neutral amino acid transporter, y+ system) member 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019849.3NP_062823.1  asc-type amino acid transporter 1

    See identical proteins and their annotated locations for NP_062823.1

    Status: VALIDATED

    Source sequence(s)
    AB037670, BC022457
    Consensus CDS
    CCDS12431.1
    UniProtKB/Swiss-Prot
    B2RE84, Q9NS82
    Related
    ENSP00000253188.2, ENST00000253188.8
    Conserved Domains (1) summary
    cl26159
    Location:15498
    AA_permease_2; Amino acid permease

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    33208664..33225850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024451610.2XP_024307378.1  asc-type amino acid transporter 1 isoform X3

    Conserved Domains (2) summary
    cl26159
    Location:97471
    AA_permease_2; Amino acid permease
    cl26386
    Location:284
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
  2. XM_011527120.2XP_011525422.1  asc-type amino acid transporter 1 isoform X2

    Conserved Domains (1) summary
    TIGR00911
    Location:97608
    2A0308; L-type amino acid transporter
  3. XM_006723284.3XP_006723347.1  asc-type amino acid transporter 1 isoform X4

    Conserved Domains (1) summary
    TIGR00911
    Location:15419
    2A0308; L-type amino acid transporter
  4. XM_011527119.2XP_011525421.1  asc-type amino acid transporter 1 isoform X1

    Conserved Domains (1) summary
    TIGR00911
    Location:15635
    2A0308; L-type amino acid transporter
  5. XM_047439101.1XP_047295057.1  asc-type amino acid transporter 1 isoform X5

    UniProtKB/TrEMBL
    K7EK24
    Related
    ENSP00000465421.1, ENST00000590036.5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    35727305..35744598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054321472.1XP_054177447.1  asc-type amino acid transporter 1 isoform X3

  2. XM_054321471.1XP_054177446.1  asc-type amino acid transporter 1 isoform X2

  3. XM_054321473.1XP_054177448.1  asc-type amino acid transporter 1 isoform X4

  4. XM_054321470.1XP_054177445.1  asc-type amino acid transporter 1 isoform X1

  5. XM_054321474.1XP_054177449.1  asc-type amino acid transporter 1 isoform X5

    UniProtKB/TrEMBL
    K7EK24