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thumpd2 THUMP domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 562797, updated on 1-Aug-2018

Summary

Official Symbol
thumpd2provided by ZNC
Official Full Name
THUMP domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-090428-2
See related
Ensembl:ENSDARG00000093070 Vega:OTTDARG00000024815
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Orthologs

Genomic context

See thumpd2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (24623144..24631253)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (24604523..24612850)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L13a Neighboring gene COMM domain containing 9 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3b Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
tRNA (guanine) methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
tRNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    24623144..24631253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_686171.7XP_691263.4  THUMP domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    X1WET5
    Related
    ENSDARP00000128736.1, OTTDARP00000026332, ENSDART00000156734.2
    Conserved Domains (2) summary
    cd11715
    Location:4217
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    cl17173
    Location:225358
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. XM_009293062.3XP_009291337.1  THUMP domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cd11715
    Location:4217
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394990.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    185196..193233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473168.1XP_021328843.1  THUMP domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    cl17173
    Location:225358
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    cl28094
    Location:1355
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  2. XM_021473169.1XP_021328844.1  THUMP domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cd11715
    Location:4217
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
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