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Thumpd2 THUMP domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 72167, updated on 23-May-2018

Summary

Official Symbol
Thumpd2provided by MGI
Official Full Name
THUMP domain containing 2provided by MGI
Primary source
MGI:MGI:1919417
See related
Ensembl:ENSMUSG00000024246
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810025A12Rik
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See Thumpd2 in Genome Data Viewer
Location:
17; 17 E3
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (81024247..81065135, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (81425667..81464425, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2 pseudogene Neighboring gene transmembrane protein 178 Neighboring gene predicted gene, 33944 Neighboring gene predicted gene, 34070

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
tRNA (guanine) methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
methylation IEA
Inferred from Electronic Annotation
more info
 
tRNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028138.1NP_082414.1  THUMP domain-containing protein 2

    See identical proteins and their annotated locations for NP_082414.1

    Status: VALIDATED

    Source sequence(s)
    AC165966, AK012806, BY133372
    Consensus CDS
    CCDS50190.1
    UniProtKB/Swiss-Prot
    Q9CZB3
    Related
    ENSMUSP00000025093.4, ENSMUST00000025093.4
    Conserved Domains (3) summary
    cd11715
    Location:1876
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    smart00981
    Location:203264
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:274419
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

    Range
    81024247..81065135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246636.2XP_011244938.1  THUMP domain-containing protein 2 isoform X1

    Conserved Domains (3) summary
    cd11715
    Location:1876
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    smart00981
    Location:203264
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:274423
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. XM_011246637.2XP_011244939.1  THUMP domain-containing protein 2 isoform X2

    Conserved Domains (2) summary
    smart00981
    Location:143204
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:214363
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  3. XM_017317655.1XP_017173144.1  THUMP domain-containing protein 2 isoform X4

  4. XM_017317656.1XP_017173145.1  THUMP domain-containing protein 2 isoform X5

  5. XM_011246639.2XP_011244941.1  THUMP domain-containing protein 2 isoform X3

    Conserved Domains (3) summary
    cd11715
    Location:1876
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    smart00981
    Location:203264
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:274357
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RNA

  1. XR_001782115.1 RNA Sequence

  2. XR_001782116.1 RNA Sequence

  3. XR_876548.2 RNA Sequence

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