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Msgn1 mesogenin 1 [ Mus musculus (house mouse) ]

Gene ID: 56184, updated on 16-Oct-2021

Summary

Official Symbol
Msgn1provided by MGI
Official Full Name
mesogenin 1provided by MGI
Primary source
MGI:MGI:1860483
See related
Ensembl:ENSMUSG00000047002
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Msgn; pMsgn1
Orthologs
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Genomic context

See Msgn1 in Genome Data Viewer
Location:
12; 12 A1.1
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (11258383..11258949, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (11208382..11208948, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (11215188..11215754, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 Neighboring gene RIKEN cDNA 9530020I12 gene Neighboring gene GEN1, Holliday junction 5' flap endonuclease Neighboring gene structural maintenance of chromosomes 6 Neighboring gene microRNA 7675

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Clone Names

  • MGC151373

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in mesoderm formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within segment specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within somitogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
mesogenin-1
Names
pMesogenin1
paraxial mesoderm-specific expression and regulatory capacities
paraxial mesoderm-specific mesogenin1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019544.1NP_062417.1  mesogenin-1

    See identical proteins and their annotated locations for NP_062417.1

    Status: PROVISIONAL

    Source sequence(s)
    AF261105
    Consensus CDS
    CCDS25814.1
    UniProtKB/Swiss-Prot
    Q9JK54
    Related
    ENSMUSP00000055001.2, ENSMUST00000049877.3
    Conserved Domains (1) summary
    pfam00010
    Location:119173
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    11258383..11258949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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