Format

Send to:

Choose Destination

MSGN1 mesogenin 1 [ Homo sapiens (human) ]

Gene ID: 343930, updated on 23-Nov-2021

Summary

Official Symbol
MSGN1provided by HGNC
Official Full Name
mesogenin 1provided by HGNC
Primary source
HGNC:HGNC:14907
See related
Ensembl:ENSG00000151379 MIM:612209
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MSOG; pMsgn1
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See MSGN1 in Genome Data Viewer
Location:
2p24.2
Exon count:
1
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (17816460..17817798)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (17997727..17999065)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 6 Neighboring gene uncharacterized LOC105373449 Neighboring gene GEN1 Holliday junction 5' flap endonuclease Neighboring gene Sharpr-MPRA regulatory region 14936 Neighboring gene uncharacterized LOC112267888 Neighboring gene zona pellucida glycoprotein AX, pseudogene Neighboring gene potassium voltage-gated channel modifier subfamily S member 3

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in mesoderm formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in segment specification IEA
Inferred from Electronic Annotation
more info
 
involved_in somitogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
mesogenin-1
Names
pMesogenin1
paraxial mesoderm-specific mesogenin1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105569.3NP_001099039.1  mesogenin-1

    See identical proteins and their annotated locations for NP_001099039.1

    Status: VALIDATED

    Source sequence(s)
    AC093731
    Consensus CDS
    CCDS42657.1
    UniProtKB/Swiss-Prot
    A6NI15
    Related
    ENSP00000281047.3, ENST00000281047.4
    Conserved Domains (1) summary
    pfam00010
    Location:125179
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    17816460..17817798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center