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TRERF1 transcriptional regulating factor 1 [ Homo sapiens (human) ]

Gene ID: 55809, updated on 12-Oct-2019

Summary

Official Symbol
TRERF1provided by HGNC
Official Full Name
transcriptional regulating factor 1provided by HGNC
Primary source
HGNC:HGNC:18273
See related
Ensembl:ENSG00000124496 MIM:610322
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RAPA; BCAR2; TREP132; TReP-132; HSA277276; dJ139D8.5
Summary
This gene encodes a zinc-finger transcriptional regulating protein which interacts with CBP/p300 to regulate the human gene CYP11A1. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2014]
Expression
Ubiquitous expression in testis (RPKM 2.9), bone marrow (RPKM 2.6) and 24 other tissues See more
Orthologs

Genomic context

See TRERF1 in Genome Data Viewer
Location:
6p21.1
Exon count:
26
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (42224931..42452224, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (42192669..42419943, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene guanylate cyclase activator 1B Neighboring gene mitochondrial ribosomal protein S10 Neighboring gene uncharacterized LOC105375061 Neighboring gene arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2-like Neighboring gene ribosomal protein L36a pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Endoderm Differentiation, organism-specific biosystem (from WikiPathways)
    Endoderm Differentiation, organism-specific biosystemModel depicting endoderm specification based on the literature and highly enriched gene expression profiles via comparison across dozens of independent induced and embryonic pluripotent stem cell lin...
  • Mesodermal Commitment Pathway, organism-specific biosystem (from WikiPathways)
    Mesodermal Commitment Pathway, organism-specific biosystemModel depicting mesodermal specification based on the literature and highly enriched gene expression profiles via comparison across dozens of independent induced and embryonic pluripotent stem cell l...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ21198

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding, bending NAS
Non-traceable Author Statement
more info
PubMed 
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific NAS
Non-traceable Author Statement
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor transcription coactivator activity NAS
Non-traceable Author Statement
more info
PubMed 
transcription coregulator activity NAS
Non-traceable Author Statement
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription regulatory region DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cholesterol catabolic process NAS
Non-traceable Author Statement
more info
PubMed 
homeostatic process NAS
Non-traceable Author Statement
more info
PubMed 
multicellular organism development NAS
Non-traceable Author Statement
more info
PubMed 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of hormone biosynthetic process NAS
Non-traceable Author Statement
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
steroid biosynthetic process NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
fibrillar center IDA
Inferred from Direct Assay
more info
 
histone deacetylase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transcriptional-regulating factor 1
Names
breast cancer anti-estrogen resistance 2
rapa-1
rapa-2
transcriptional regulating protein 132
zinc finger protein rapa
zinc finger transcription factor TReP-132

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001297573.1NP_001284502.1  transcriptional-regulating factor 1 isoform 1

    See identical proteins and their annotated locations for NP_001284502.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transript and encodes the longer isoform (1).
    Source sequence(s)
    AF297872, AL096814, AM404182
    Consensus CDS
    CCDS75455.1
    UniProtKB/Swiss-Prot
    Q96PN7
    UniProtKB/TrEMBL
    Q05GC8
    Related
    ENSP00000439689.1, ENST00000541110.5
    Conserved Domains (5) summary
    smart00717
    Location:908953
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:10351057
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  2. NM_033502.4NP_277037.1  transcriptional-regulating factor 1 isoform 2

    See identical proteins and their annotated locations for NP_277037.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice donor site in the 5' coding region, compared to variant 1. Variant 2 encodes a shorter isoform (2), compared to isoform 1.
    Source sequence(s)
    AF297872, AL096814, AL450325, AM404182, AM404183
    Consensus CDS
    CCDS4867.1
    UniProtKB/Swiss-Prot
    Q96PN7
    UniProtKB/TrEMBL
    Q05GC8
    Related
    ENSP00000362013.4, ENST00000372922.8
    Conserved Domains (5) summary
    smart00717
    Location:888933
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:10151037
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:781835
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:889933
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    42224931..42452224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017011055.1XP_016866544.1  transcriptional-regulating factor 1 isoform X12

  2. XM_017011037.1XP_016866526.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  3. XM_017011050.1XP_016866539.1  transcriptional-regulating factor 1 isoform X8

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  4. XM_011514741.2XP_011513043.1  transcriptional-regulating factor 1 isoform X1

    See identical proteins and their annotated locations for XP_011513043.1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  5. XM_017011034.1XP_016866523.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  6. XM_011514743.2XP_011513045.1  transcriptional-regulating factor 1 isoform X1

    See identical proteins and their annotated locations for XP_011513045.1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  7. XM_011514742.2XP_011513044.1  transcriptional-regulating factor 1 isoform X1

    See identical proteins and their annotated locations for XP_011513044.1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  8. XM_017011038.1XP_016866527.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  9. XM_017011047.1XP_016866536.1  transcriptional-regulating factor 1 isoform X5

    Conserved Domains (4) summary
    smart00717
    Location:904949
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:755809
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:905949
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  10. XM_017011045.1XP_016866534.1  transcriptional-regulating factor 1 isoform X3

    Conserved Domains (4) summary
    smart00717
    Location:930975
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:781835
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:931975
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  11. XM_017011044.1XP_016866533.1  transcriptional-regulating factor 1 isoform X2

    Conserved Domains (5) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:10771099
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  12. XM_011514744.1XP_011513046.1  transcriptional-regulating factor 1 isoform X1

    See identical proteins and their annotated locations for XP_011513046.1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  13. XM_017011054.1XP_016866543.1  transcriptional-regulating factor 1 isoform X11

    UniProtKB/Swiss-Prot
    Q96PN7
    Related
    ENSP00000346285.2, ENST00000354325.2
    Conserved Domains (5) summary
    smart00717
    Location:805850
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:932954
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:698752
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:806850
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  14. XM_017011052.1XP_016866541.1  transcriptional-regulating factor 1 isoform X10

    UniProtKB/Swiss-Prot
    Q96PN7
    Related
    ENSP00000339438.2, ENST00000340840.6
    Conserved Domains (4) summary
    smart00717
    Location:805850
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:698752
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:806850
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  15. XM_017011051.1XP_016866540.1  transcriptional-regulating factor 1 isoform X9

    Conserved Domains (4) summary
    smart00717
    Location:847892
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:698752
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:848892
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  16. XM_017011049.1XP_016866538.1  transcriptional-regulating factor 1 isoform X7

    UniProtKB/Swiss-Prot
    Q96PN7
    Conserved Domains (5) summary
    smart00717
    Location:888933
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:10151037
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:781835
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:889933
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  17. XM_017011048.1XP_016866537.1  transcriptional-regulating factor 1 isoform X6

    UniProtKB/TrEMBL
    Q05GC8
    Conserved Domains (5) summary
    smart00717
    Location:908953
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:10351057
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  18. XM_017011046.1XP_016866535.1  transcriptional-regulating factor 1 isoform X4

    Conserved Domains (4) summary
    smart00717
    Location:908953
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:909953
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  19. XM_017011053.1XP_016866542.1  transcriptional-regulating factor 1 isoform X10

    UniProtKB/Swiss-Prot
    Q96PN7
    Conserved Domains (4) summary
    smart00717
    Location:805850
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:698752
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:806850
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  20. XM_017011040.1XP_016866529.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  21. XM_017011041.1XP_016866530.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  22. XM_011514745.1XP_011513047.1  transcriptional-regulating factor 1 isoform X1

    See identical proteins and their annotated locations for XP_011513047.1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  23. XM_017011039.1XP_016866528.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  24. XM_017011035.1XP_016866524.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  25. XM_017011036.1XP_016866525.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  26. XM_017011042.1XP_016866531.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  27. XM_017011043.1XP_016866532.1  transcriptional-regulating factor 1 isoform X1

    Conserved Domains (4) summary
    smart00717
    Location:950995
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:801855
    ELM2; ELM2 domain
    pfam13912
    Location:514534
    zf-C2H2_6; C2H2-type zinc finger
    cl21498
    Location:951995
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_018415.1: Suppressed sequence

    Description
    NM_018415.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
  2. NM_033501.1: Suppressed sequence

    Description
    NM_033501.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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