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GOLGA2P5 GOLGA2 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 55592, updated on 11-Jun-2021

Summary

Official Symbol
GOLGA2P5provided by HGNC
Official Full Name
GOLGA2 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:25315
See related
Ensembl:ENSG00000238105
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GOLGA2B; GOLGA2L1
Expression
Broad expression in testis (RPKM 4.5), duodenum (RPKM 2.8) and 24 other tissues See more
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Genomic context

See GOLGA2P5 in Genome Data Viewer
Location:
12q23.1
Exon count:
17
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (100156391..100173343, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (100550169..100567121, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene UHRF1 binding protein 1 like Neighboring gene dynamin 1 pseudogene 19 Neighboring gene RNA, 7SL, cytoplasmic 176, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7946 Neighboring gene microRNA 1827 Neighboring gene actin related protein 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • golgi autoantigen, golgin subfamily a, 2-like 1
  • golgin A2 family, member B
  • golgin A2 pseudogene 5
  • golgin A2-like 1
  • golgin subfamily A member 2B

Clone Names

  • DKFZp434A0411, DKFZp434K1926, DKFZp434M0331

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in spindle assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in Golgi cis cisterna IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in Golgi cisterna membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024261.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains different exon structure in the 3' region, compared to variant 1. Additional exon structure may be present in the 5' region, but the 5' exon structure cannot be determined due to lack of 5'-complete transcript support for this variant, and the presence of ambiguous splicing among other 5' end transcripts.
    Source sequence(s)
    AL137680, BC048272, BQ366018
    Related
    ENST00000421840.2
  2. NR_036632.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript. Additional exon structure may be present in the 5' region, but the 5' exon structure cannot be determined due to lack of 5'-complete transcript support for this variant, and the presence of ambiguous splicing among other 5' end transcripts.
    Source sequence(s)
    AF217995, BQ366018, BX647364
    Related
    ENST00000397112.8

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    100156391..100173343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_017600.1: Suppressed sequence

    Description
    NM_017600.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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