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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001300980.2 → NP_001287909.1 transmembrane and coiled-coil domain-containing protein 6 isoform 1
See identical proteins and their annotated locations for NP_001287909.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BC001910, BC009618, DB196005
- Consensus CDS
-
CCDS75320.1
- UniProtKB/Swiss-Prot
-
Q96DC7
- Related
- ENSP00000252100.6, ENST00000252100.6
- Conserved Domains (3) summary
-
- COG5064
Location:23 → 399
- SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
- cd00020
Location:104 → 218
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- sd00043
Location:104 → 135
- ARM; armadillo repeat [structural motif]
-
NM_001300982.2 → NP_001287911.1 transmembrane and coiled-coil domain-containing protein 6 isoform 3
See identical proteins and their annotated locations for NP_001287911.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks two consecutive exons and has an alternate splice site in the 5' region, which result in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK097088, AK289495, BC065828, DB196005
- UniProtKB/Swiss-Prot
-
Q96DC7
- UniProtKB/TrEMBL
-
A8K0D0
-
NM_018502.5 → NP_060972.3 transmembrane and coiled-coil domain-containing protein 6 isoform 2
See identical proteins and their annotated locations for NP_060972.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has an alternate splice site in the central coding region but maintains the reading frame, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
- Source sequence(s)
-
AK097088, BC065828, DB196005
- Consensus CDS
-
CCDS4233.2
- UniProtKB/Swiss-Prot
- Q96DC7, Q9P198
- Related
- ENSP00000378166.3, ENST00000394671.8
- Conserved Domains (3) summary
-
- COG5064
Location:23 → 393
- SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
- cd00020
Location:104 → 218
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- sd00043
Location:104 → 135
- ARM; armadillo repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
140596530..140647732
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047417356.1 → XP_047273312.1 transmembrane and coiled-coil domain-containing protein 6 isoform X6
-
XM_047417357.1 → XP_047273313.1 transmembrane and coiled-coil domain-containing protein 6 isoform X7
-
XM_024446125.2 → XP_024301893.1 transmembrane and coiled-coil domain-containing protein 6 isoform X7
-
XM_047417358.1 → XP_047273314.1 transmembrane and coiled-coil domain-containing protein 6 isoform X7
-
XM_047417355.1 → XP_047273311.1 transmembrane and coiled-coil domain-containing protein 6 isoform X6
-
XM_011537665.3 → XP_011535967.1 transmembrane and coiled-coil domain-containing protein 6 isoform X6
See identical proteins and their annotated locations for XP_011535967.1
- Conserved Domains (2) summary
-
- sd00043
Location:34 → 69
- ARM; armadillo repeat [structural motif]
- cl25709
Location:4 → 290
- Arm_3; Atypical Arm repeat
-
XM_047417354.1 → XP_047273310.1 transmembrane and coiled-coil domain-containing protein 6 isoform X5
-
XM_011537663.3 → XP_011535965.1 transmembrane and coiled-coil domain-containing protein 6 isoform X4
- Conserved Domains (3) summary
-
- COG5064
Location:23 → 399
- SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
- cd00020
Location:104 → 218
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- sd00043
Location:104 → 135
- ARM; armadillo repeat [structural motif]
-
XM_017009618.2 → XP_016865107.1 transmembrane and coiled-coil domain-containing protein 6 isoform X2
-
XM_005268477.2 → XP_005268534.1 transmembrane and coiled-coil domain-containing protein 6 isoform X1
- Conserved Domains (3) summary
-
- COG5064
Location:23 → 394
- SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
- cd00020
Location:104 → 218
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- sd00043
Location:104 → 135
- ARM; armadillo repeat [structural motif]
-
XM_047417353.1 → XP_047273309.1 transmembrane and coiled-coil domain-containing protein 6 isoform X3
-
XM_024446124.2 → XP_024301892.1 transmembrane and coiled-coil domain-containing protein 6 isoform X6
- Conserved Domains (2) summary
-
- sd00043
Location:34 → 69
- ARM; armadillo repeat [structural motif]
- cl25709
Location:4 → 290
- Arm_3; Atypical Arm repeat
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
141164858..141170811
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)