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si:ch73-252i11.1 si:ch73-252i11.1 [ Danio rerio (zebrafish) ]

Gene ID: 553517, updated on 18-Sep-2024

Summary

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Official Symbol
si:ch73-252i11.1provided by ZNC
Official Full Name
si:ch73-252i11.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-141210-7
See related
AllianceGenome:ZFIN:ZDB-GENE-141210-7
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zc3hdc1l
Summary
Predicted to enable NAD+ ADP-ribosyltransferase activity and metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (269443..306664, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (16213..30015)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene RAS-like, estrogen-regulated, growth inhibitor Neighboring gene metalloproteinase inhibitor 3 Neighboring gene synapsin III Neighboring gene protein mono-ADP-ribosyltransferase PARP12-like Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene GEN1 Holliday junction 5' flap endonuclease Neighboring gene si:ch211-51e12.7 Neighboring gene mesogenin 1 Neighboring gene mitochondrial ribosomal protein S10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Origin and evolution of the zinc finger antiviral protein. Gonçalves-Carneiro D, et al. PLoS Pathog, 2021 Apr. PMID 33901262, Free PMC Article
  2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables NAD+-protein poly-ADP-ribosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC553517
Names
zinc finger CCCH type domain containing 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327797.2 → NP_001314726.2  uncharacterized protein LOC553517

    Status: VALIDATED

    Source sequence(s)
    BC085328, CABZ01085273, CABZ01085274
    UniProtKB/TrEMBL
    A0A8M1P914
    Conserved Domains (3) summary
    smart00356
    Location:262 → 286
    ZnF_C3H1; zinc finger
    cd01439
    Location:536 → 651
    TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    pfam02825
    Location:359 → 433
    WWE; WWE domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    269443..306664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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