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ARGLU1 arginine and glutamate rich 1 [ Homo sapiens (human) ]

Gene ID: 55082, updated on 1-Jun-2020

Summary

Official Symbol
ARGLU1provided by HGNC
Official Full Name
arginine and glutamate rich 1provided by HGNC
Primary source
HGNC:HGNC:25482
See related
Ensembl:ENSG00000134884 MIM:614046
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in lung (RPKM 83.2), spleen (RPKM 81.9) and 25 other tissues See more
Orthologs

Genomic context

See ARGLU1 in Genome Data Viewer
Location:
13q33.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (106541673..106568164, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (107195662..107220514, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370346 Neighboring gene uncharacterized LOC112268109 Neighboring gene ephrin B2 Neighboring gene uncharacterized LOC105370348 Neighboring gene long intergenic non-protein coding RNA 551

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of arginine and glutamate rich 1 (ARGLU1; FLJ 10154) by siRNA inhibits HIV-1 replication in HeLa-derived TZM-bl cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10154, DKFZp686O08106

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cadherin binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
 
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
arginine and glutamate-rich protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018011.4NP_060481.3  arginine and glutamate-rich protein 1

    See identical proteins and their annotated locations for NP_060481.3

    Status: VALIDATED

    Source sequence(s)
    AA445997, AI623424, AL442127, BC050434, DB482545
    Consensus CDS
    CCDS41906.1
    UniProtKB/Swiss-Prot
    Q9NWB6
    UniProtKB/TrEMBL
    A0A024RDW4
    Related
    ENSP00000383059.3, ENST00000400198.8
    Conserved Domains (1) summary
    pfam15346
    Location:130269
    ARGLU; Arginine and glutamate-rich 1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    106541673..106568164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_243043.3 RNA Sequence

    Related
    ENST00000472226.2
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