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imp4 IMP4, U3 small nucleolar ribonucleoprotein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549383, updated on 17-Aug-2024

Summary

Official Symbol
imp4provided by Xenbase
Official Full Name
IMP4, U3 small nucleolar ribonucleoproteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-6040852
See related
Ensembl:ENSXETG00000045525
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See imp4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (598268..620655)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016689358.1 (810..2029, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 3, gene 1 Neighboring gene uncharacterized LOC116406687 Neighboring gene coiled-coil domain containing 115 Neighboring gene organic solute transporter subunit alpha-like Neighboring gene FtsJ RNA 2'-O-methyltransferase 1

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables rRNA primary transcript binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within rRNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
U3 small nucleolar ribonucleoprotein protein IMP4
Names
IMP4 homolog, U3 small nucleolar ribonucleoprotein
IMP4, U3 small nucleolar ribonucleoprotein, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016629.2NP_001016629.1  U3 small nucleolar ribonucleoprotein protein IMP4

    See identical proteins and their annotated locations for NP_001016629.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760453
    UniProtKB/TrEMBL
    B7ZUK0, Q28IE0
    Related
    ENSXETP00000106809.1, ENSXETT00000113145.1
    Conserved Domains (1) summary
    smart00879
    Location:86253
    Brix; The Brix domain is found in a number of eukaryotic proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    598268..620655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)