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INO80D INO80 complex subunit D [ Homo sapiens (human) ]

Gene ID: 54891, updated on 22-Sep-2022

Summary

Official Symbol
INO80Dprovided by HGNC
Official Full Name
INO80 complex subunit Dprovided by HGNC
Primary source
HGNC:HGNC:25997
See related
Ensembl:ENSG00000114933 MIM:619207; AllianceGenome:HGNC:25997
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in DNA recombination and DNA repair. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bone marrow (RPKM 2.7), thyroid (RPKM 1.0) and 25 other tissues See more
Orthologs
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Genomic context

See INO80D in Genome Data Viewer
Location:
2q33.3
Exon count:
15
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (205993721..206086174, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (206475671..206568063, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (206858445..206950898, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 178 Neighboring gene peptidylprolyl isomerase A pseudogene 68 Neighboring gene ribosomal protein L27 pseudogene 8 Neighboring gene Sharpr-MPRA regulatory region 7917 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S1 Neighboring gene GCSH pseudogene 3 Neighboring gene small nucleolar RNA, C/D box 51 Neighboring gene eukaryotic translation elongation factor 1 beta 2

Genomic regions, transcripts, and products

Bibliography

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20309

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017759.5NP_060229.3  INO80 complex subunit D

    See identical proteins and their annotated locations for NP_060229.3

    Status: VALIDATED

    Source sequence(s)
    AC007679, AK000316, AK096585, BC004193, CR746991, DB233201
    Consensus CDS
    CCDS46500.1
    UniProtKB/Swiss-Prot
    Q53TQ3, Q9NXD5
    Related
    ENSP00000384198.1, ENST00000403263.6
    Conserved Domains (3) summary
    PRK14971
    Location:211290
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:9141025
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:1879
    zf-C3Hc3H; Potential DNA-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    205993721..206086174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047444830.1XP_047300786.1  INO80 complex subunit D isoform X3

  2. XM_011511375.3XP_011509677.1  INO80 complex subunit D isoform X3

    See identical proteins and their annotated locations for XP_011509677.1

    UniProtKB/Swiss-Prot
    Q53TQ3
    Conserved Domains (1) summary
    pfam13891
    Location:342406
    zf-C3Hc3H; Potential DNA-binding domain
  3. XM_011511371.3XP_011509673.1  INO80 complex subunit D isoform X2

    See identical proteins and their annotated locations for XP_011509673.1

    UniProtKB/Swiss-Prot
    Q53TQ3, Q9NXD5
    Conserved Domains (3) summary
    PRK14971
    Location:211290
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:9141025
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:1879
    zf-C3Hc3H; Potential DNA-binding domain
  4. XM_011511369.4XP_011509671.1  INO80 complex subunit D isoform X1

    Conserved Domains (1) summary
    pfam13891
    Location:50108
    zf-C3Hc3H; Potential DNA-binding domain
  5. XM_011511370.3XP_011509672.1  INO80 complex subunit D isoform X2

    See identical proteins and their annotated locations for XP_011509672.1

    UniProtKB/Swiss-Prot
    Q53TQ3, Q9NXD5
    Conserved Domains (3) summary
    PRK14971
    Location:211290
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:9141025
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:1879
    zf-C3Hc3H; Potential DNA-binding domain
  6. XM_011511376.2XP_011509678.1  INO80 complex subunit D isoform X3

    See identical proteins and their annotated locations for XP_011509678.1

    UniProtKB/Swiss-Prot
    Q53TQ3
    Conserved Domains (1) summary
    pfam13891
    Location:342406
    zf-C3Hc3H; Potential DNA-binding domain
  7. XM_047444829.1XP_047300785.1  INO80 complex subunit D isoform X3

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_015495299.1 Reference GRCh38.p14 PATCHES

    Range
    102739..195192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    206475671..206568063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)