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QRICH1 glutamine rich 1 [ Homo sapiens (human) ]

Gene ID: 54870, updated on 20-Feb-2017
Official Symbol
QRICH1provided by HGNC
Official Full Name
glutamine rich 1provided by HGNC
Primary source
HGNC:HGNC:24713
See related
Ensembl:ENSG00000198218 Vega:OTTHUMG00000156772
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
3p21.31
Exon count:
13
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 3 NC_000003.12 (49029707..49094373, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49067140..49131504, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene DALR anticodon binding domain containing 3 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 3 Neighboring gene microRNA 425 Neighboring gene microRNA 191 Neighboring gene inosine monophosphate dehydrogenase 2 Neighboring gene RNA, 7SL, cytoplasmic 182, pseudogene Neighboring gene microRNA 6890 Neighboring gene glutaminyl-tRNA synthetase Neighboring gene ubiquitin specific peptidase 19

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ20259, MGC131838

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
 
multicellular organism development IBA
Inferred from Biological aspect of Ancestor
more info
 
regulation of cell morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
regulation of transcription from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320580.1NP_001307509.1  glutamine-rich protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    AK292536, BC000978, BC110855, DA238657
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Related
    ENSP00000412890, OTTHUMP00000210560, ENST00000424300, OTTHUMT00000345672
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  2. NM_001320581.1NP_001307510.1  glutamine-rich protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    BC000978, BC110855, DA238657, DB062422
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  3. NM_001320582.1NP_001307511.1  glutamine-rich protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    BC000978, BC110855, DA238657, DB062061
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  4. NM_001320583.1NP_001307512.1  glutamine-rich protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    BC000978, BC110855, DA238657, DB062828
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  5. NM_001320584.1NP_001307513.1  glutamine-rich protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    AC135506, BC000978, BC110855, DA388875
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  6. NM_001320585.1NP_001307514.1  glutamine-rich protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    AC135506, BC000978, BC110855, HY006215
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  7. NM_017730.3NP_060200.2  glutamine-rich protein 1

    See identical proteins and their annotated locations for NP_060200.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-8 encode the same protein.
    Source sequence(s)
    AC135506, AK025013, AK074313, BC000978, BC110855, DA241522
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Related
    ENSP00000350094, OTTHUMP00000210559, ENST00000357496, OTTHUMT00000345671
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)
  8. NM_198880.2NP_942581.1  glutamine-rich protein 1

    See identical proteins and their annotated locations for NP_942581.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-8 encode the same protein.
    Source sequence(s)
    AC135506, AK025013, AK074313, AW673597, BC000978, BC110855, DA241522
    Consensus CDS
    CCDS2787.1
    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Related
    ENSP00000378830, OTTHUMP00000210558, ENST00000395443, OTTHUMT00000345669
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p7 Primary Assembly

    Range
    49029707..49094373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011533863.1XP_011532165.1  glutamine-rich protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011532165.1

    UniProtKB/Swiss-Prot
    Q2TAL8
    UniProtKB/TrEMBL
    A1L3Z9
    Conserved Domains (2) summary
    cd01671
    Location:645
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam12012
    Location:599758
    DUF3504; Domain of unknown function (DUF3504)

Alternate CHM1_1.1

Genomic

  1. NC_018914.2 Alternate CHM1_1.1

    Range
    49019701..49084601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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