Format

Send to:

Choose Destination

BCAS3 BCAS3 microtubule associated cell migration factor [ Homo sapiens (human) ]

Gene ID: 54828, updated on 15-Jun-2019

Summary

Official Symbol
BCAS3provided by HGNC
Official Full Name
BCAS3 microtubule associated cell migration factorprovided by HGNC
Primary source
HGNC:HGNC:14347
See related
Ensembl:ENSG00000141376 MIM:607470
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MAAB; GAOB1
Expression
Ubiquitous expression in testis (RPKM 4.9), brain (RPKM 4.0) and 25 other tissues See more
Orthologs

Genomic context

See BCAS3 in Genome Data Viewer
Location:
17q23.2
Exon count:
40
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 17 NC_000017.11 (60677775..61392838)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (58755172..59470199)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1999 Neighboring gene ribosomal protein SA pseudogene 66 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1D Neighboring gene RNA, U6 small nuclear 623, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 606, pseudogene Neighboring gene ribosomal protein L36a pseudogene 46 Neighboring gene keratin 18 pseudogene 61 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 28 Neighboring gene RNA, 7SL, cytoplasmic 448, pseudogene Neighboring gene ribosomal protein L23a pseudogene 74 Neighboring gene uncharacterized LOC107984992 Neighboring gene uncharacterized LOC101927855 Neighboring gene TBX2 promoter region Neighboring gene TBX2 antisense RNA 1 Neighboring gene T-box transcription factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide association study of optic disc parameters.
NHGRI GWA Catalog
A genome-wide scan for breast cancer risk haplotypes among African American women.
NHGRI GWA Catalog
Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
NHGRI GWA Catalog
Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.
NHGRI GWA Catalog
Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.
NHGRI GWA Catalog
Many sequence variants affecting diversity of adult human height.
NHGRI GWA Catalog
Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.
NHGRI GWA Catalog
New loci associated with kidney function and chronic kidney disease.
NHGRI GWA Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
NHGRI GWA Catalog

Pathways from BioSystems

  • Ectoderm Differentiation, organism-specific biosystem (from WikiPathways)
    Ectoderm Differentiation, organism-specific biosystemModel depicting ectoderm specification based on the literature and highly enriched gene expression profiles via comparison across dozens of independent induced and embryonic pluripotent stem cell lin...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4973, FLJ20128, DKFZp686O1527

Gene Ontology Provided by GOA

Function Evidence Code Pubs
acetyltransferase activator activity IDA
Inferred from Direct Assay
more info
PubMed 
beta-tubulin binding IDA
Inferred from Direct Assay
more info
PubMed 
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
histone acetyltransferase binding IPI
Inferred from Physical Interaction
more info
PubMed 
histone binding IDA
Inferred from Direct Assay
more info
PubMed 
nuclear hormone receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Golgi organization ISS
Inferred from Sequence or Structural Similarity
more info
 
activation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
angiogenesis IEA
Inferred from Electronic Annotation
more info
 
cellular response to estrogen stimulus IDA
Inferred from Direct Assay
more info
PubMed 
microtubule organizing center organization ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of focal adhesion assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of actin cytoskeleton reorganization ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of catalytic activity IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of endothelial cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of filopodium assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of intracellular protein transport ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
regulation of establishment of cell polarity ISS
Inferred from Sequence or Structural Similarity
more info
 
response to starvation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tube formation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cell leading edge ISS
Inferred from Sequence or Structural Similarity
more info
 
cell periphery IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic microtubule ISS
Inferred from Sequence or Structural Similarity
more info
 
intermediate filament cytoskeleton ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
transcriptionally active chromatin IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
breast carcinoma-amplified sequence 3
Names
BCAS4/BCAS3 fusion
Rudhira
breast carcinoma amplified sequence 4/3 fusion protein
metastasis associated antigen of breast cancer
protein Maab1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099432.3NP_001092902.1  breast carcinoma-amplified sequence 3 isoform 1

    See identical proteins and their annotated locations for NP_001092902.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has multiple differences in the coding region, compared to variant 3. Isoforms 1 and 3 are the same length but have distinct C-termini.
    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Consensus CDS
    CCDS45749.1
    UniProtKB/Swiss-Prot
    Q9H6U6
    Related
    ENSP00000375067.4, ENST00000390652.9
    Conserved Domains (2) summary
    pfam12490
    Location:581753
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. NM_001320470.3NP_001307399.1  breast carcinoma-amplified sequence 3 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longer isoform (3). Isoforms 1 and 3 are the same length but have distinct C-termini.
    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Consensus CDS
    CCDS82177.1
    UniProtKB/Swiss-Prot
    Q9H6U6
    Related
    ENSP00000466078.1, ENST00000589222.5
    Conserved Domains (2) summary
    pfam12490
    Location:521738
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  3. NM_001330413.2NP_001317342.1  breast carcinoma-amplified sequence 3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Consensus CDS
    CCDS82176.1
    UniProtKB/TrEMBL
    Q05D99
    Related
    ENSP00000468592.1, ENST00000588462.5
    Conserved Domains (2) summary
    pfam12490
    Location:581753
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  4. NM_001330414.2NP_001317343.1  breast carcinoma-amplified sequence 3 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Consensus CDS
    CCDS82178.1
    UniProtKB/TrEMBL
    Q05D99
    Related
    ENSP00000386173.2, ENST00000408905.7
  5. NM_001353144.2NP_001340073.1  breast carcinoma-amplified sequence 3 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Conserved Domains (1) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
  6. NM_001353145.2NP_001340074.1  breast carcinoma-amplified sequence 3 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Conserved Domains (1) summary
    pfam12490
    Location:551768
    BCAS3; Breast carcinoma amplified sequence 3
  7. NM_001353146.2NP_001340075.1  breast carcinoma-amplified sequence 3 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Conserved Domains (1) summary
    pfam12490
    Location:581753
    BCAS3; Breast carcinoma amplified sequence 3
  8. NM_017679.5NP_060149.3  breast carcinoma-amplified sequence 3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks alternate in-frame exons in the 3' coding region, compared to variant 3, resulting in a shorter protein (isoform 2), compared to isoform 3.
    Source sequence(s)
    AC005746, AC005884, AC015876, AC079005, AC110602
    Consensus CDS
    CCDS11626.1
    UniProtKB/Swiss-Prot
    Q9H6U6
    Related
    ENSP00000385323.2, ENST00000407086.7
    Conserved Domains (2) summary
    pfam12490
    Location:521738
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    60677851..61392831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011524939.2XP_011523241.1  breast carcinoma-amplified sequence 3 isoform X1

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. XM_017024786.2XP_016880275.1  breast carcinoma-amplified sequence 3 isoform X6

  3. XM_011524941.2XP_011523243.1  breast carcinoma-amplified sequence 3 isoform X8

    Conserved Domains (2) summary
    pfam12490
    Location:521738
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  4. XM_017024790.2XP_016880279.1  breast carcinoma-amplified sequence 3 isoform X13

  5. XM_017024793.2XP_016880282.1  breast carcinoma-amplified sequence 3 isoform X14

  6. XM_017024783.2XP_016880272.1  breast carcinoma-amplified sequence 3 isoform X2

  7. XM_017024785.2XP_016880274.1  breast carcinoma-amplified sequence 3 isoform X5

  8. XM_017024784.2XP_016880273.1  breast carcinoma-amplified sequence 3 isoform X4

  9. XM_017024787.2XP_016880276.1  breast carcinoma-amplified sequence 3 isoform X7

  10. XM_017024788.2XP_016880277.1  breast carcinoma-amplified sequence 3 isoform X9

  11. XM_017024789.2XP_016880278.1  breast carcinoma-amplified sequence 3 isoform X12

  12. XM_011524940.2XP_011523242.1  breast carcinoma-amplified sequence 3 isoform X3

    Conserved Domains (2) summary
    pfam12490
    Location:551768
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  13. XM_011524942.3XP_011523244.1  breast carcinoma-amplified sequence 3 isoform X10

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  14. XM_011524943.3XP_011523245.1  breast carcinoma-amplified sequence 3 isoform X11

    Conserved Domains (2) summary
    pfam12490
    Location:551768
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  15. XM_011524950.2XP_011523252.1  breast carcinoma-amplified sequence 3 isoform X21

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  16. XM_011524947.2XP_011523249.1  breast carcinoma-amplified sequence 3 isoform X16

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  17. XM_011524949.3XP_011523251.1  breast carcinoma-amplified sequence 3 isoform X18

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  18. XM_011524951.3XP_011523253.1  breast carcinoma-amplified sequence 3 isoform X19

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  19. XM_011524948.3XP_011523250.1  breast carcinoma-amplified sequence 3 isoform X17

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  20. XM_024450812.1XP_024306580.1  breast carcinoma-amplified sequence 3 isoform X23

    Conserved Domains (1) summary
    pfam12490
    Location:521738
    BCAS3; Breast carcinoma amplified sequence 3
  21. XM_017024794.2XP_016880283.1  breast carcinoma-amplified sequence 3 isoform X20

  22. XM_011524946.3XP_011523248.1  breast carcinoma-amplified sequence 3 isoform X15

    Conserved Domains (2) summary
    pfam12490
    Location:611783
    BCAS3; Breast carcinoma amplified sequence 3
    cl02567
    Location:344449
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  23. XM_017024795.2XP_016880284.1  breast carcinoma-amplified sequence 3 isoform X22

  24. XM_017024796.1XP_016880285.1  breast carcinoma-amplified sequence 3 isoform X24

    UniProtKB/TrEMBL
    K7ESE9
    Related
    ENSP00000468682.1, ENST00000585744.5
  25. XM_024450813.1XP_024306581.1  breast carcinoma-amplified sequence 3 isoform X25

    Related
    ENSP00000464825.1, ENST00000588874.5
    Conserved Domains (2) summary
    pfam12490
    Location:292509
    BCAS3; Breast carcinoma amplified sequence 3
    cl25539
    Location:115220
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_934493.3 RNA Sequence

  2. XR_001752547.2 RNA Sequence

Support Center