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Bcas3 BCAS3 microtubule associated cell migration factor [ Mus musculus (house mouse) ]

Gene ID: 192197, updated on 5-Mar-2024

Summary

Official Symbol
Bcas3provided by MGI
Official Full Name
BCAS3 microtubule associated cell migration factorprovided by MGI
Primary source
MGI:MGI:2385848
See related
Ensembl:ENSMUSG00000059439 AllianceGenome:MGI:2385848
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
K20D4; Phaf2; rudhira; 1500019F07Rik; 2610028P08Rik
Summary
Predicted to enable several functions, including acetyltransferase activator activity; beta-tubulin binding activity; and histone acetyltransferase binding activity. Involved in several processes, including negative regulation of focal adhesion assembly; positive regulation of cellular component organization; and regulation of GTPase activity. Located in cell leading edge; cell periphery; and cytoskeleton. Is expressed in several structures, including cardiovascular system; embryo mesenchyme; genitourinary system; hemolymphoid system; and yolk sac. Orthologous to human BCAS3 (BCAS3 microtubule associated cell migration factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in lung adult (RPKM 3.3), kidney adult (RPKM 3.3) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 C; 11 51.34 cM
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (85243611..85716884)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (85353110..85826058)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_30238 Neighboring gene STARR-seq mESC enhancer starr_30241 Neighboring gene amyloid beta precursor protein binding protein 2, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E593 Neighboring gene STARR-positive B cell enhancer ABC_E303 Neighboring gene protein phosphatase 1D magnesium-dependent, delta isoform Neighboring gene STARR-seq mESC enhancer starr_30248 Neighboring gene STARR-seq mESC enhancer starr_30251 Neighboring gene limb enhancer upstream of Tbx2 Neighboring gene STARR-seq mESC enhancer starr_30253 Neighboring gene BCAS3 microtubule associated cell migration factor, opposite strand 1 Neighboring gene STARR-seq mESC enhancer starr_30254 Neighboring gene RIKEN cDNA 2610027K06 gene Neighboring gene STARR-seq mESC enhancer starr_30255 Neighboring gene BCAS3 microtubule associated cell migration factor, opposite strand 2 Neighboring gene microRNA 5110 Neighboring gene Tbx2 5' regulatory region Neighboring gene STARR-seq mESC enhancer starr_30256 Neighboring gene VISTA enhancer mm1583 Neighboring gene HLEA enhancer upstream of Tbx4 Neighboring gene Tbx4 lung enhancer Neighboring gene T-box 2 Neighboring gene T-box 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables acetyltransferase activator activity ISO
Inferred from Sequence Orthology
more info
 
enables beta-tubulin binding ISO
Inferred from Sequence Orthology
more info
 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables histone acetyltransferase binding ISO
Inferred from Sequence Orthology
more info
 
enables histone binding ISO
Inferred from Sequence Orthology
more info
 
enables nuclear receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within angiogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cellular response to estrogen stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of catalytic activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of endothelial cell migration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of actin cytoskeleton organization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to estrogen ISO
Inferred from Sequence Orthology
more info
 
involved_in response to starvation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cell leading edge IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell periphery IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic microtubule IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
part_of euchromatin ISO
Inferred from Sequence Orthology
more info
 
located_in intermediate filament cytoskeleton IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in phagophore assembly site ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
BCAS3 microtubule associated cell migration factor
Names
breast carcinoma amplified sequence 3
breast carcinoma-amplified sequence 3 homolog
protein rudhira

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166642.1NP_001160114.1  BCAS3 microtubule associated cell migration factor isoform b

    See identical proteins and their annotated locations for NP_001160114.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a. Variants 2 and 3 both encode the same isoform.
    Source sequence(s)
    AK032423, BC060690, BX323026, BY116917, CN711546
    Consensus CDS
    CCDS48873.1
    UniProtKB/TrEMBL
    Q0VF62, Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  2. NM_001166643.1NP_001160115.1  BCAS3 microtubule associated cell migration factor isoform b

    See identical proteins and their annotated locations for NP_001160115.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a. Variants 2 and 3 both encode the same isoform.
    Source sequence(s)
    AL604024, BC060690, BC086693, BY116917
    Consensus CDS
    CCDS48873.1
    UniProtKB/TrEMBL
    Q0VF62, Q3TAC0
    Related
    ENSMUSP00000090496.4, ENSMUST00000092821.10
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  3. NM_138681.4NP_619622.3  BCAS3 microtubule associated cell migration factor isoform a

    See identical proteins and their annotated locations for NP_619622.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK032423, BC060690, BX323026, BY116917, CN711546
    Consensus CDS
    CCDS25195.1
    UniProtKB/Swiss-Prot
    Q8CC16, Q8CCN5, Q9EPX3
    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    85243611..85716884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245680.2XP_030101540.1  BCAS3 microtubule associated cell migration factor isoform X1

    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  2. XM_030245681.2XP_030101541.1  BCAS3 microtubule associated cell migration factor isoform X2

    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  3. XM_006532541.3XP_006532604.1  BCAS3 microtubule associated cell migration factor isoform X19

    See identical proteins and their annotated locations for XP_006532604.1

    UniProtKB/TrEMBL
    Q0VF62, Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  4. XM_036156433.1XP_036012326.1  BCAS3 microtubule associated cell migration factor isoform X2

    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  5. XM_030245679.2XP_030101539.1  BCAS3 microtubule associated cell migration factor isoform X1

    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  6. XM_036156436.1XP_036012329.1  BCAS3 microtubule associated cell migration factor isoform X11

    UniProtKB/TrEMBL
    B1AR74, Q3TAC0
    Related
    ENSMUSP00000103697.2, ENSMUST00000108062.8
    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  7. XM_030245687.1XP_030101547.1  BCAS3 microtubule associated cell migration factor isoform X8

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  8. XM_030245689.1XP_030101549.1  BCAS3 microtubule associated cell migration factor isoform X17

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  9. XM_006532540.3XP_006532603.1  BCAS3 microtubule associated cell migration factor isoform X15

    See identical proteins and their annotated locations for XP_006532603.1

    UniProtKB/Swiss-Prot
    Q8CC16, Q8CCN5, Q9EPX3
    UniProtKB/TrEMBL
    Q3TAC0
    Related
    ENSMUSP00000074416.5, ENSMUST00000074875.11
    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  10. XM_030245685.2XP_030101545.1  BCAS3 microtubule associated cell migration factor isoform X5

    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  11. XM_017314342.2XP_017169831.1  BCAS3 microtubule associated cell migration factor isoform X14

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  12. XM_030245688.1XP_030101548.1  BCAS3 microtubule associated cell migration factor isoform X12

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  13. XM_036156438.1XP_036012331.1  BCAS3 microtubule associated cell migration factor isoform X20

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  14. XM_030245678.2XP_030101538.1  BCAS3 microtubule associated cell migration factor isoform X1

    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  15. XM_036156434.1XP_036012327.1  BCAS3 microtubule associated cell migration factor isoform X4

    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  16. XM_030245684.2XP_030101544.1  BCAS3 microtubule associated cell migration factor isoform X2

    Conserved Domains (1) summary
    pfam12490
    Location:581764
    BCAS3; Breast carcinoma amplified sequence 3
  17. XM_030245682.2XP_030101542.1  BCAS3 microtubule associated cell migration factor isoform X3

    Conserved Domains (1) summary
    pfam12490
    Location:534762
    BCAS3; Breast carcinoma amplified sequence 3
  18. XM_011248810.4XP_011247112.1  BCAS3 microtubule associated cell migration factor isoform X21

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  19. XM_030245686.2XP_030101546.1  BCAS3 microtubule associated cell migration factor isoform X5

    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3
  20. XM_006532542.5XP_006532605.1  BCAS3 microtubule associated cell migration factor isoform X22

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  21. XM_006532537.5XP_006532600.1  BCAS3 microtubule associated cell migration factor isoform X7

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  22. XM_006532539.4XP_006532602.1  BCAS3 microtubule associated cell migration factor isoform X13

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  23. XM_006532536.5XP_006532599.1  BCAS3 microtubule associated cell migration factor isoform X6

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  24. XM_006532538.4XP_006532601.1  BCAS3 microtubule associated cell migration factor isoform X10

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:594777
    BCAS3; Breast carcinoma amplified sequence 3
  25. XM_036156435.1XP_036012328.1  BCAS3 microtubule associated cell migration factor isoform X9

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:534762
    BCAS3; Breast carcinoma amplified sequence 3
  26. XM_036156437.1XP_036012330.1  BCAS3 microtubule associated cell migration factor isoform X18

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:534762
    BCAS3; Breast carcinoma amplified sequence 3
  27. XM_017314343.1XP_017169832.1  BCAS3 microtubule associated cell migration factor isoform X16

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:534762
    BCAS3; Breast carcinoma amplified sequence 3
  28. XM_036156439.1XP_036012332.1  BCAS3 microtubule associated cell migration factor isoform X20

    UniProtKB/TrEMBL
    Q3TAC0
    Conserved Domains (1) summary
    pfam12490
    Location:521749
    BCAS3; Breast carcinoma amplified sequence 3

RNA

  1. XR_001779924.3 RNA Sequence