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ERRFI1 ERBB receptor feedback inhibitor 1 [ Homo sapiens (human) ]

Gene ID: 54206, updated on 26-Jan-2024

Summary

Official Symbol
ERRFI1provided by HGNC
Official Full Name
ERBB receptor feedback inhibitor 1provided by HGNC
Primary source
HGNC:HGNC:18185
See related
Ensembl:ENSG00000116285 MIM:608069; AllianceGenome:HGNC:18185
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIG6; RALT; MIG-6; GENE-33
Summary
ERRFI1 is a cytoplasmic protein whose expression is upregulated with cell growth (Wick et al., 1995 [PubMed 7641805]). It shares significant homology with the protein product of rat gene-33, which is induced during cell stress and mediates cell signaling (Makkinje et al., 2000 [PubMed 10749885]; Fiorentino et al., 2000 [PubMed 11003669]).[supplied by OMIM, Mar 2008]
Expression
Broad expression in liver (RPKM 123.7), gall bladder (RPKM 60.1) and 20 other tissues See more
Orthologs
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Genomic context

See ERRFI1 in Genome Data Viewer
Location:
1p36.23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (8011727..8026309, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (7542658..7557236, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (8071787..8086369, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancers GRCh37_chr1:8020839-8021622 and GRCh37_chr1:8021623-8022406 Neighboring gene Parkinsonism associated deglycase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 98 Neighboring gene NANOG hESC enhancer GRCh37_chr1:8051898-8052428 Neighboring gene uncharacterized LOC124903834 Neighboring gene Sharpr-MPRA regulatory region 3725 Neighboring gene Sharpr-MPRA regulatory region 3772 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 191 Neighboring gene ERRFI1 divergent transcript Neighboring gene Sharpr-MPRA regulatory region 2737 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:8105847-8107046 Neighboring gene MPRA-validated peak44 silencer Neighboring gene ribosomal protein L7a pseudogene 18 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8127937-8128436 Neighboring gene VISTA enhancer hs1833 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:8154529-8155728 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:8156741-8157940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8175654-8176154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 100 Neighboring gene uncharacterized LOC107984915

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Vif vif HIV-1 Vif downregulates the expression of ERBB receptor feedback inhibitor 1 (ERRFI1) in Vif-expression T cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTPase activator activity TAS
Traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in bile acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in cartilage development IEA
Inferred from Electronic Annotation
more info
 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in chondrocyte proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in embryo implantation IEA
Inferred from Electronic Annotation
more info
 
involved_in epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in epithelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in fat pad development IEA
Inferred from Electronic Annotation
more info
 
involved_in gene expression IEA
Inferred from Electronic Annotation
more info
 
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in limb joint morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in liver development IEA
Inferred from Electronic Annotation
more info
 
involved_in lung alveolus development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in lung epithelium development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in lung vasculature development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of epidermal growth factor receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of epidermal growth factor-activated receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of protein autophosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in phosphatidylinositol 3-kinase/protein kinase B signal transduction IEA
Inferred from Electronic Annotation
more info
 
involved_in progesterone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of keratinocyte differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of keratinocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in response to 1-oleoyl-sn-glycerol 3-phosphate IEA
Inferred from Electronic Annotation
more info
 
involved_in response to estradiol IEA
Inferred from Electronic Annotation
more info
 
involved_in response to insulin IEA
Inferred from Electronic Annotation
more info
 
involved_in response to progesterone IEA
Inferred from Electronic Annotation
more info
 
involved_in response to xenobiotic stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in skin morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in tissue homeostasis IEA
Inferred from Electronic Annotation
more info
 
involved_in uterine epithelium development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
ERBB receptor feedback inhibitor 1
Names
mitogen-inducible gene 6 protein
receptor-associated late transducer

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018948.4NP_061821.1  ERBB receptor feedback inhibitor 1

    See identical proteins and their annotated locations for NP_061821.1

    Status: VALIDATED

    Source sequence(s)
    AK096149, AL137274, BC025337, DB033666
    Consensus CDS
    CCDS94.1
    UniProtKB/Swiss-Prot
    B2RDX9, Q9NTG9, Q9UD05, Q9UJM3
    UniProtKB/TrEMBL
    A0A024R4I1, B3KTV8, I6S2Y9
    Related
    ENSP00000366702.5, ENST00000377482.10
    Conserved Domains (2) summary
    pfam09027
    Location:468
    GTPase_binding; GTPase binding
    pfam11555
    Location:315367
    Inhibitor_Mig-6; EGFR receptor inhibitor Mig-6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    8011727..8026309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047422698.1XP_047278654.1  ERBB receptor feedback inhibitor 1 isoform X1

    UniProtKB/Swiss-Prot
    B2RDX9, Q9NTG9, Q9UD05, Q9UJM3
    UniProtKB/TrEMBL
    A0A024R4I1, B3KTV8, I6S2Y9
  2. XM_005263477.4XP_005263534.1  ERBB receptor feedback inhibitor 1 isoform X2

    UniProtKB/TrEMBL
    B3KTV8
    Conserved Domains (1) summary
    pfam11555
    Location:264316
    Inhibitor_Mig-6; EGFR receptor inhibitor Mig-6
  3. XM_047422701.1XP_047278657.1  ERBB receptor feedback inhibitor 1 isoform X3

    UniProtKB/TrEMBL
    B3KTV8

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    7542658..7557236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054337101.1XP_054193076.1  ERBB receptor feedback inhibitor 1 isoform X1

    UniProtKB/Swiss-Prot
    B2RDX9, Q9NTG9, Q9UD05, Q9UJM3
    UniProtKB/TrEMBL
    A0A024R4I1, B3KTV8, I6S2Y9
  2. XM_054337102.1XP_054193077.1  ERBB receptor feedback inhibitor 1 isoform X2

    UniProtKB/TrEMBL
    B3KTV8
  3. XM_054337103.1XP_054193078.1  ERBB receptor feedback inhibitor 1 isoform X3

    UniProtKB/TrEMBL
    B3KTV8