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SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 [ Bos taurus (domestic cattle) ]

Gene ID: 535113, updated on 18-Aug-2024

Summary

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Official Symbol
SNRNP70provided by VGNC
Official Full Name
small nuclear ribonucleoprotein U1 subunit 70provided by VGNC
Primary source
VGNC:VGNC:35073
See related
BGD:BT21754; Ensembl:ENSBTAG00000048800
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
SNRP70
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (55604510..55618992)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene neurotrophin 4 Neighboring gene potassium voltage-gated channel subfamily A member 7 Neighboring gene uncharacterized LOC101903913 Neighboring gene lin-7 homolog B, crumbs cell polarity complex component Neighboring gene uncharacterized LOC101903620 Neighboring gene PTPRF interacting protein alpha 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC138058

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U1 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U1 small nuclear ribonucleoprotein 70 kDa
Names
U1 snRNP 70 kDa
U1-70K
small nuclear ribonucleoprotein 70kDa (U1)
small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076046.2 → NP_001069514.1  U1 small nuclear ribonucleoprotein 70 kDa

    See identical proteins and their annotated locations for NP_001069514.1

    Status: PROVISIONAL

    Source sequence(s)
    BC114762
    UniProtKB/Swiss-Prot
    Q1RMR2
    Related
    ENSBTAP00000002587.7, ENSBTAT00000002587.7
    Conserved Domains (2) summary
    pfam12220
    Location:3 → 93
    U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
    cd12236
    Location:102 → 187
    RRM_snRNP70; RNA recognition motif (RRM) found in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    55604510..55618992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005219315.5 → XP_005219372.1  U1 small nuclear ribonucleoprotein 70 kDa isoform X2

    See identical proteins and their annotated locations for XP_005219372.1

    Conserved Domains (2) summary
    pfam12220
    Location:3 → 93
    U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
    cd12236
    Location:102 → 187
    RRM_snRNP70; RNA recognition motif (RRM) found in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins

  2. XM_059876833.1 → XP_059732816.1  U1 small nuclear ribonucleoprotein 70 kDa isoform X1

    UniProtKB/Swiss-Prot
    Q1RMR2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1RMR2.1 GenPept UniProtKB/Swiss-Prot:Q1RMR2

Gene LinkOut

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Research Materials