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Krr1 KRR1, small subunit (SSU) processome component, homolog (yeast) [ Mus musculus (house mouse) ]

Gene ID: 52705, updated on 23-Jun-2021

Summary

Official Symbol
Krr1provided by MGI
Official Full Name
KRR1, small subunit (SSU) processome component, homolog (yeast)provided by MGI
Primary source
MGI:MGI:1289274
See related
Ensembl:ENSMUSG00000063334
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hrb; Hrb2; AI255219; AI428520; D10Ertd773; D10Ertd773e; 2610511F02Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 9.9), bladder adult (RPKM 6.8) and 24 other tissues See more
Orthologs
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Genomic context

See Krr1 in Genome Data Viewer
Location:
10 D1- D2; 10 59.97 cM
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (111808600..111824335)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (111972695..111988430)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (111409751..111425486)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene Neighboring gene predicted gene, 20758 Neighboring gene GLI pathogenesis-related 1 (glioma) Neighboring gene calcyphosphine 2 pseudogene Neighboring gene GLI pathogenesis-related 1 like 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within rRNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in intercellular bridge ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
KRR1 small subunit processome component homolog
Names
HIV-1 Rev binding protein 2
HIV-1 Rev-binding protein 2 homolog
KRR-R motif-containing protein 1
KRR1, small subunit processome component

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178610.4NP_848725.2  KRR1 small subunit processome component homolog

    See identical proteins and their annotated locations for NP_848725.2

    Status: VALIDATED

    Source sequence(s)
    AC167231, AK041854, CD547185
    Consensus CDS
    CCDS24168.1
    UniProtKB/Swiss-Prot
    Q8BGA5
    Related
    ENSMUSP00000125746.2, ENSMUST00000163048.8
    Conserved Domains (2) summary
    smart00322
    Location:157207
    KH; K homology RNA-binding domain
    COG1094
    Location:55240
    Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    111808600..111824335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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