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R3hcc1l R3H domain and coiled-coil containing 1 like [ Mus musculus (house mouse) ]

Gene ID: 52013, updated on 2-Nov-2024

Summary

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Official Symbol
R3hcc1lprovided by MGI
Official Full Name
R3H domain and coiled-coil containing 1 likeprovided by MGI
Primary source
MGI:MGI:1196316
See related
Ensembl:ENSMUSG00000025184 AllianceGenome:MGI:1196316
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GIDRP86; Gidrp88; C10orf28; D19Ertd386e; 1700036B12Rik
Summary
Predicted to be part of exon-exon junction complex. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and skin. Orthologous to human R3HCC1L (R3H domain and coiled-coil containing 1 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 6.2), bladder adult (RPKM 4.3) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See R3hcc1l in Genome Data Viewer
Location:
19 C3; 19 36.47 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (42506419..42580713)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (42517980..42592274)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41850 Neighboring gene STARR-positive B cell enhancer ABC_E7660 Neighboring gene predicted gene, 41851 Neighboring gene lysyl oxidase-like 4 Neighboring gene STARR-seq mESC enhancer starr_46188 Neighboring gene predicted gene, 25216

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of exon-exon junction complex ISO
Inferred from Sequence Orthology
more info
  
part_of exon-exon junction complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein R3HCC1L
Names
growth inhibition and differentiation related protein 86
growth inhibition and differentiation-related protein 88 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177464.4 → NP_803415.1  coiled-coil domain-containing protein R3HCC1L

    See identical proteins and their annotated locations for NP_803415.1

    Status: VALIDATED

    Source sequence(s)
    AC124552
    Consensus CDS
    CCDS29829.1
    UniProtKB/Swiss-Prot
    Q3UGJ8, Q5U5U8, Q8BJM3
    Related
    ENSMUSP00000026188.4, ENSMUST00000026188.10
    Conserved Domains (1) summary
    cd12428
    Location:627 → 691
    RRM_PARN; RNA recognition motif in poly(A)-specific ribonuclease PARN and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    42506419..42580713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527182.4 → XP_006527245.1  coiled-coil domain-containing protein R3HCC1L isoform X1

    Conserved Domains (1) summary
    cl17169
    Location:107 → 171
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BJM3.1 GenPept UniProtKB/Swiss-Prot:Q8BJM3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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