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R3HCC1L R3H domain and coiled-coil containing 1 like [ Homo sapiens (human) ]

Gene ID: 27291, updated on 5-Jan-2022

Summary

Official Symbol
R3HCC1Lprovided by HGNC
Official Full Name
R3H domain and coiled-coil containing 1 likeprovided by HGNC
Primary source
HGNC:HGNC:23512
See related
Ensembl:ENSG00000166024
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PSORT; GIDRP86; GIDRP88; C10orf28
Summary
Colocalizes with exon-exon junction complex. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Broad expression in testis (RPKM 8.9), bone marrow (RPKM 4.0) and 25 other tissues See more
Orthologs
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Genomic context

See R3HCC1L in Genome Data Viewer
Location:
10q24.2
Exon count:
16
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (98134630..98244897)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (99894414..100004654)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 340 Neighboring gene cartilage acidic protein 1 Neighboring gene microRNA 3085 Neighboring gene lysyl oxidase like 4 Neighboring gene Sharpr-MPRA regulatory region 15191 Neighboring gene uncharacterized LOC105378449

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25458, FLJ37160

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
coiled-coil domain-containing protein R3HCC1L
Names
R3H and coiled-coil domain-containing protein 1-like
growth inhibition and differentiation related protein 86
growth inhibition and differentiation-related protein 88
putative mitochondrial space protein 32.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256619.2NP_001243548.2  coiled-coil domain-containing protein R3HCC1L isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS73178.1
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_001256620.2NP_001243549.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Related
    ENSP00000359616.3, ENST00000370584.7
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. NM_001256621.2NP_001243550.2  coiled-coil domain-containing protein R3HCC1L isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS58093.1
    Related
    ENSP00000479916.1, ENST00000613938.4
    Conserved Domains (1) summary
    cl17169
    Location:36100
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. NM_001351010.2NP_001337939.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. NM_001351011.2NP_001337940.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. NM_001351012.2NP_001337941.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  7. NM_001351013.2NP_001337942.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Related
    ENSP00000314018.6, ENST00000314594.6
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  8. NM_001351014.2NP_001337943.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  9. NM_001351015.2NP_001337944.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11) lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Related
    ENSP00000298999.3, ENST00000298999.8
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  10. NM_001351016.2NP_001337945.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  11. NM_001351017.2NP_001337946.2  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (13) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  12. NM_014472.5NP_055287.5  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  13. NM_138469.3NP_612478.3  coiled-coil domain-containing protein R3HCC1L isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
    Source sequence(s)
    AL139241, AL355301
    Consensus CDS
    CCDS31267.1
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    98134630..98244897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539642.1XP_011537944.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537944.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_011539639.1XP_011537941.1  coiled-coil domain-containing protein R3HCC1L isoform X1

    Conserved Domains (1) summary
    cl17169
    Location:651715
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. XM_011539649.1XP_011537951.1  coiled-coil domain-containing protein R3HCC1L isoform X3

    Conserved Domains (1) summary
    cl17169
    Location:637701
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. XM_011539643.1XP_011537945.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537945.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Related
    ENSP00000483494.1, ENST00000612478.4
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. XM_024447941.1XP_024303709.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. XM_011539641.1XP_011537943.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537943.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  7. XM_011539644.2XP_011537946.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537946.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  8. XM_011539646.1XP_011537948.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537948.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  9. XM_011539640.1XP_011537942.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537942.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  10. XM_011539648.1XP_011537950.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537950.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  11. XM_011539645.2XP_011537947.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    See identical proteins and their annotated locations for XP_011537947.1

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
  12. XM_017016081.1XP_016871570.1  coiled-coil domain-containing protein R3HCC1L isoform X4

    UniProtKB/Swiss-Prot
    Q7Z5L2
    Conserved Domains (1) summary
    cl17169
    Location:630694
    RRM_SF; RNA recognition motif (RRM) superfamily
  13. XM_017016074.1XP_016871563.1  coiled-coil domain-containing protein R3HCC1L isoform X2

    UniProtKB/TrEMBL
    A0A087X0M0
    Conserved Domains (1) summary
    cl17169
    Location:644708
    RRM_SF; RNA recognition motif (RRM) superfamily
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