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TMEM14C transmembrane protein 14C [ Homo sapiens (human) ]

Gene ID: 51522, updated on 24-Nov-2020

Summary

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Official Symbol
TMEM14Cprovided by HGNC
Official Full Name
transmembrane protein 14Cprovided by HGNC
Primary source
HGNC:HGNC:20952
See related
Ensembl:ENSG00000111843 MIM:615318
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NET26; C6orf53; HSPC194; MSTP073; bA421M1.6
Expression
Ubiquitous expression in fat (RPKM 65.2), adrenal (RPKM 55.4) and 25 other tissues See more
Orthologs
all

Genomic context

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See TMEM14C in Genome Data Viewer
Location:
6p24.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (10723070..10731127)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (10723148..10741577)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene chromosome 6 open reading frame 52 Neighboring gene uncharacterized LOC105374923 Neighboring gene PAK1 interacting protein 1 Neighboring gene transmembrane protein 14B Neighboring gene RNA, 5S ribosomal pseudogene 203 Neighboring gene male germ cell associated kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Nuclear membrane proteins with potential disease links found by subtractive proteomics. Schirmer EC, et al. Science, 2003 Sep 5. PMID 12958361
  2. Discovery of genes essential for heme biosynthesis through large-scale gene expression analysis. Nilsson R, et al. Cell Metab, 2009 Aug. PMID 19656490, Free PMC Article
  3. Biochemical and computational analysis of LNX1 interacting proteins. Wolting CD, et al. PLoS One, 2011. PMID 22087225, Free PMC Article
  4. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. Zhang QH, et al. Genome Res, 2000 Oct. PMID 11042152, Free PMC Article
  5. Systematic identification of pathological lamin A interactors. Dittmer TA, et al. Mol Biol Cell, 2014 May. PMID 24623722, Free PMC Article

See all (18) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association. (HuGE Navigator)
    Title: Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.
  2. Required for functional heme biosynthesis in erythroid cells.
    Title: Discovery of genes essential for heme biosynthesis through large-scale gene expression analysis.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
erythrocyte differentiation IEA
Inferred from Electronic Annotation
more info
  
heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
mitochondrial transport IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
regulation of heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
  
mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
mitochondrial membrane IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 14C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165258.2 → NP_001158730.1  transmembrane protein 14C

    See identical proteins and their annotated locations for NP_001158730.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AL702149, BC010086, CX784985
    Consensus CDS
    CCDS4514.1
    UniProtKB/Swiss-Prot
    Q9P0S9
    UniProtKB/TrEMBL
    A0A024R001
    Related
    ENSP00000444561.1, ENST00000541412.5
    Conserved Domains (1) summary
    pfam03647
    Location:12 → 101
    Tmemb_14; Transmembrane proteins 14C

  2. NM_016462.4 → NP_057546.1  transmembrane protein 14C

    See identical proteins and their annotated locations for NP_057546.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    BC010086, CX784985
    Consensus CDS
    CCDS4514.1
    UniProtKB/Swiss-Prot
    Q9P0S9
    UniProtKB/TrEMBL
    A0A024R001
    Related
    ENSP00000229563.5, ENST00000229563.6
    Conserved Domains (1) summary
    pfam03647
    Location:12 → 101
    Tmemb_14; Transmembrane proteins 14C

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    10723070..10731127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_018654713.1 Reference GRCh38.p13 PATCHES

    Range
    233954..242011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9P0S9.1 GenPept UniProtKB/Swiss-Prot:Q9P0S9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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