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Conserved domains on  [gi|7705501|ref|NP_057546|]
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transmembrane protein 14C [Homo sapiens]

Protein Classification

TMEM14 family protein( domain architecture ID 10508392)

TMEM14 family protein contains four hydrophobic alpha-helical regions, three of which are membrane-spanning, similar to Arabidopsis thaliana fatty acid export proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
13-101 2.58e-26

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


:

Pssm-ID: 427423  Cd Length: 89  Bit Score: 93.33  E-value: 2.58e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705501     13 FGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLI 92
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLNAPYGLELALGASAVLAGVMGPRFIKTRKFMPAGLL 80

                  ....*....
gi 7705501     93 AGASLLMVA 101
Cdd:pfam03647  81 ALLSLLMLA 89
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
13-101 2.58e-26

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 427423  Cd Length: 89  Bit Score: 93.33  E-value: 2.58e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705501     13 FGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLI 92
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLNAPYGLELALGASAVLAGVMGPRFIKTRKFMPAGLL 80

                  ....*....
gi 7705501     93 AGASLLMVA 101
Cdd:pfam03647  81 ALLSLLMLA 89
COG5548 COG5548
Uncharacterized membrane protein, UPF0136 family [Function unknown];
17-93 4.06e-08

Uncharacterized membrane protein, UPF0136 family [Function unknown];


Pssm-ID: 227835  Cd Length: 105  Bit Score: 47.18  E-value: 4.06e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7705501   17 YAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDpRNVWVFLATSGTLA--GIMGMRFYHSGKFMPAGLIA 93
Cdd:COG5548  10 LSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQG-QTWGLILATVVSAAllVFFALRLVRSRKPVPAGLTT 87
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
13-101 2.58e-26

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 427423  Cd Length: 89  Bit Score: 93.33  E-value: 2.58e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705501     13 FGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLI 92
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLNAPYGLELALGASAVLAGVMGPRFIKTRKFMPAGLL 80

                  ....*....
gi 7705501     93 AGASLLMVA 101
Cdd:pfam03647  81 ALLSLLMLA 89
COG5548 COG5548
Uncharacterized membrane protein, UPF0136 family [Function unknown];
17-93 4.06e-08

Uncharacterized membrane protein, UPF0136 family [Function unknown];


Pssm-ID: 227835  Cd Length: 105  Bit Score: 47.18  E-value: 4.06e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7705501   17 YAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDpRNVWVFLATSGTLA--GIMGMRFYHSGKFMPAGLIA 93
Cdd:COG5548  10 LSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQG-QTWGLILATVVSAAllVFFALRLVRSRKPVPAGLTT 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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