Format

Send to:

Choose Destination

WDR83OS WD repeat domain 83 opposite strand [ Homo sapiens (human) ]

Gene ID: 51398, updated on 22-Aug-2021

Summary

Official Symbol
WDR83OSprovided by HGNC
Official Full Name
WD repeat domain 83 opposite strandprovided by HGNC
Primary source
HGNC:HGNC:30203
See related
Ensembl:ENSG00000105583 MIM:618474
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PAT10; PAT-10; PTD008; ASTERIX; C19orf56
Expression
Ubiquitous expression in ovary (RPKM 32.4), thyroid (RPKM 28.3) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See WDR83OS in Genome Data Viewer
Location:
19p13.13
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (12668071..12671023, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12778887..12780229, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L10 pseudogene 16 Neighboring gene mannosidase alpha class 2B member 1 Neighboring gene WD repeat domain 83 Neighboring gene CRISPRi-FlowFISH-validated DHPS regulatory element Neighboring gene deoxyhypusine synthase Neighboring gene CRISPRi-FlowFISH-validated WDR83OS regulatory element

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein folding chaperone IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein folding chaperone IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 
involved_in protein insertion into ER membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein insertion into ER membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
PAT complex subunit Asterix
Names
UPF0139 membrane protein C19orf56
WDR83 opposite strand
protein Asterix
protein associated with the ER translocon of 10kDa

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016145.4NP_057229.1  PAT complex subunit Asterix

    See identical proteins and their annotated locations for NP_057229.1

    Status: VALIDATED

    Source sequence(s)
    AF078861
    Consensus CDS
    CCDS12274.1
    UniProtKB/Swiss-Prot
    Q9Y284
    Related
    ENSP00000468969.1, ENST00000596731.7
    Conserved Domains (1) summary
    pfam03669
    Location:5103
    UPF0139; Uncharacterized protein family (UPF0139)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    12668071..12671023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017026864.1XP_016882353.1  PAT complex subunit Asterix isoform X1

    UniProtKB/Swiss-Prot
    Q9Y284
    Conserved Domains (1) summary
    pfam03669
    Location:5103
    UPF0139; Uncharacterized protein family (UPF0139)
Support Center