U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Wdr83os WD repeat domain 83 opposite strand [ Mus musculus (house mouse) ]

Gene ID: 414077, updated on 11-Apr-2024

Summary

Official Symbol
Wdr83osprovided by MGI
Official Full Name
WD repeat domain 83 opposite strandprovided by MGI
Primary source
MGI:MGI:3041257
See related
Ensembl:ENSMUSG00000059355 AllianceGenome:MGI:3041257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PAT10; PAT-10
Summary
Predicted to enable protein folding chaperone. Predicted to be involved in protein insertion into ER membrane. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including brain and retina nuclear layer. Orthologous to human WDR83OS (WD repeat domain 83 opposite strand). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in genital fat pad adult (RPKM 63.5), mammary gland adult (RPKM 62.2) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
8 C3; 8 41.55 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (85807592..85808968)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (85080963..85082339)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene G protein subunit gamma 14 Neighboring gene deoxyhypusine synthase Neighboring gene WD repeat domain containing 83 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:87604516-87604669 Neighboring gene mannosidase 2, alpha B1 Neighboring gene zinc finger protein 791

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Clone Names

  • MGC107693

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein folding chaperone IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein folding chaperone ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in multi-pass transmembrane protein insertion into ER membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in protein insertion into ER membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein insertion into ER membrane ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of multi-pass translocon complex ISO
Inferred from Sequence Orthology
more info
 
part_of protein folding chaperone complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
PAT complex subunit Asterix
Names
UPF0139 membrane protein C19orf56 homolog
protein Asterix
protein WDR83OS homolog
protein associated with the ER translocon of 10kDa

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001493.2NP_001001493.1  PAT complex subunit Asterix

    See identical proteins and their annotated locations for NP_001001493.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089623
    Consensus CDS
    CCDS80909.1
    UniProtKB/Swiss-Prot
    Q6ZWX0
    UniProtKB/TrEMBL
    F7AME8
    Related
    ENSMUSP00000078697.9, ENSMUST00000079764.14
    Conserved Domains (1) summary
    pfam03669
    Location:5103
    UPF0139; Uncharacterized protein family (UPF0139)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    85807592..85808968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)