U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRPT1 tRNA phosphotransferase 1 [ Bos taurus (domestic cattle) ]

Gene ID: 510729, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TRPT1provided by VGNC
Official Full Name
tRNA phosphotransferase 1provided by VGNC
Primary source
VGNC:VGNC:36396
See related
BGD:BT24198; Ensembl:ENSBTAG00000016555
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 29
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (42529505..42532503, complement)

Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene mono-ADP ribosylhydrolase 1 Neighboring gene fibronectin leucine rich transmembrane protein 1 Neighboring gene proline-rich protein 36-like Neighboring gene stress induced phosphoprotein 1 Neighboring gene FERM domain containing kindlin 3 Neighboring gene nudix hydrolase 22 Neighboring gene DnaJ heat shock protein family (Hsp40) member C4 Neighboring gene vascular endothelial growth factor B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC128502

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA 2'-phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tRNA 2'-phosphotransferase 1
NP_001029564.1
NP_001160074.1
XP_005227105.4
XP_005227110.1
XP_010819369.2
XP_015316748.2
XP_024842828.1
XP_059738823.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034392.4 → NP_001029564.1  tRNA 2'-phosphotransferase 1 isoform 2

    See identical proteins and their annotated locations for NP_001029564.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and uses a downstream start codon, compared to variant 1. Isoform 2 has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    NKLS02000029
    UniProtKB/Swiss-Prot
    Q3ZBM7
    Conserved Domains (1) summary
    pfam01885
    Location:1 → 153
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family

  2. NM_001166602.3 → NP_001160074.1  tRNA 2'-phosphotransferase 1 isoform 1

    See identical proteins and their annotated locations for NP_001160074.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform.
    Source sequence(s)
    NKLS02000029
    UniProtKB/Swiss-Prot
    Q3ZBM7
    Related
    ENSBTAP00000054946.2, ENSBTAT00000063145.3
    Conserved Domains (1) summary
    pfam01885
    Location:32 → 204
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    42529505..42532503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882840.1 → XP_059738823.1  tRNA 2'-phosphotransferase 1 isoform X3

  2. XM_010821067.4 → XP_010819369.2  tRNA 2'-phosphotransferase 1 isoform X4

    UniProtKB/Swiss-Prot
    Q3ZBM7

  3. XM_015461262.3 → XP_015316748.2  tRNA 2'-phosphotransferase 1 isoform X2

    UniProtKB/Swiss-Prot
    Q3ZBM7

  4. XM_005227048.5 → XP_005227105.4  tRNA 2'-phosphotransferase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q3ZBM7

  5. XM_024987060.2 → XP_024842828.1  tRNA 2'-phosphotransferase 1 isoform X5

    UniProtKB/Swiss-Prot
    Q3ZBM7
    Conserved Domains (1) summary
    pfam01885
    Location:32 → 204
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family

  6. XM_005227053.5 → XP_005227110.1  tRNA 2'-phosphotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005227110.1

    UniProtKB/Swiss-Prot
    Q3ZBM7
    Conserved Domains (1) summary
    pfam01885
    Location:32 → 204
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ZBM7.3 GenPept UniProtKB/Swiss-Prot:Q3ZBM7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials