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SMC5 structural maintenance of chromosomes 5 [ Bos taurus (domestic cattle) ]

Gene ID: 508938, updated on 17-Aug-2024

Summary

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Official Symbol
SMC5provided by VGNC
Official Full Name
structural maintenance of chromosomes 5provided by VGNC
Primary source
VGNC:VGNC:35002
See related
BGD:BT15093; Ensembl:ENSBTAG00000018437
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (46411440..46529414)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 95 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene MAM domain containing 2 Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene KLF transcription factor 9 Neighboring gene microRNA mir-2285i

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    46411440..46529414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024996166.2 → XP_024851934.1  structural maintenance of chromosomes protein 5 isoform X1

    Conserved Domains (2) summary
    cd03277
    Location:987 → 1089
    ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
    cl25732
    Location:55 → 1067
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_024996167.2 → XP_024851935.1  structural maintenance of chromosomes protein 5 isoform X3

    Conserved Domains (2) summary
    cd03277
    Location:972 → 1074
    ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
    cl25732
    Location:55 → 1052
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_002689640.7 → XP_002689686.1  structural maintenance of chromosomes protein 5 isoform X2

    See identical proteins and their annotated locations for XP_002689686.1

    UniProtKB/TrEMBL
    F1MPW4
    Related
    ENSBTAP00000053371.4, ENSBTAT00000061396.4
    Conserved Domains (2) summary
    cd03277
    Location:977 → 1079
    ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
    COG1196
    Location:55 → 1057
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_005210026.5 → XP_005210083.1  structural maintenance of chromosomes protein 5 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1LMB6
    Related
    ENSBTAP00000057777.2, ENSBTAT00000079499.2
    Conserved Domains (2) summary
    cd03277
    Location:962 → 1064
    ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
    COG1196
    Location:55 → 1042
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_024996171.2 → XP_024851939.1  structural maintenance of chromosomes protein 5 isoform X6

    Conserved Domains (2) summary
    cd03277
    Location:53 → 198
    ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
    cl25732
    Location:55 → 838
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_024996172.2 → XP_024851940.1  structural maintenance of chromosomes protein 5 isoform X7

    Conserved Domains (2) summary
    cd03277
    Location:53 → 198
    ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
    cl25732
    Location:55 → 838
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_059889455.1 → XP_059745438.1  structural maintenance of chromosomes protein 5 isoform X5

Nucleotide Protein Strain
Heading Accession and Version

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