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Sap30l SAP30-like [ Mus musculus (house mouse) ]

Gene ID: 50724, updated on 16-Oct-2021

Summary

Official Symbol
Sap30lprovided by MGI
Official Full Name
SAP30-likeprovided by MGI
Primary source
MGI:MGI:1354709
See related
Ensembl:ENSMUSG00000020519
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
L55; AF006998; 2310079P12Rik
Expression
Ubiquitous expression in duodenum adult (RPKM 29.2), adrenal adult (RPKM 28.6) and 27 other tissues See more
Orthologs
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Genomic context

See Sap30l in Genome Data Viewer
Location:
11; 11 B1.3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (57692410..57701441)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (57801637..57810615)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (57615139..57624117)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2010001A14 gene Neighboring gene predicted gene, 53707 Neighboring gene heart and neural crest derivatives expressed 1 Neighboring gene predicted gene, 32915 Neighboring gene predicted gene, 33026

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC151406, MGC151408

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables histone binding ISO
Inferred from Sequence Orthology
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables non-sequence-specific DNA binding, bending ISO
Inferred from Sequence Orthology
more info
 
enables nucleosome binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-3-phosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-4-phosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-5-phosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in fibrillar center ISO
Inferred from Sequence Orthology
more info
 
part_of histone deacetylase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of histone deacetylase complex ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
histone deacetylase complex subunit SAP30L
Names
sin3 corepressor complex subunit SAP30L
sin3-associated protein p30-like
sin3A-associated protein p30-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081168.1NP_001074637.1  histone deacetylase complex subunit SAP30L

    See identical proteins and their annotated locations for NP_001074637.1

    Status: PROVISIONAL

    Source sequence(s)
    AL732587
    Consensus CDS
    CCDS36160.1
    UniProtKB/Swiss-Prot
    Q5SQF8
    Related
    ENSMUSP00000020826.6, ENSMUST00000020826.6
    Conserved Domains (2) summary
    pfam13866
    Location:2594
    zf-SAP30; SAP30 zinc-finger
    pfam13867
    Location:114162
    SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    57692410..57701441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004936987.1 RNA Sequence

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