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cnpy1.S canopy FGF signaling regulator 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496234, updated on 17-Aug-2024

Summary

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Official Symbol
cnpy1.S
Official Full Name
canopy FGF signaling regulator 1 S homeolog
Primary source
Xenbase:XB-GENE-981810
Locus tag
XELAEV_18032829mg
See related
EnsemblRapid:ENSXLAG00005025036
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cnpy1; canopy1
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Genomic context

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Location:
chromosome: 6S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (10980459..11053357, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (10601530..10675626, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene insulin induced gene 1 S homeolog Neighboring gene engrailed homeobox 2 S homeolog Neighboring gene RNA binding motif protein 33 S homeolog Neighboring gene sonic hedgehog S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein canopy homolog 1
Names
canopy 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095420.1 → NP_001088889.1  protein canopy homolog 1 precursor

    See identical proteins and their annotated locations for NP_001088889.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088697
    UniProtKB/Swiss-Prot
    Q5M7D4
    UniProtKB/TrEMBL
    A0A974HDG2
    Related
    ENSXLAP00005074200.1, ENSXLAT00005075772.1
    Conserved Domains (1) summary
    pfam11938
    Location:28 → 167
    DUF3456; TLR4 regulator and MIR-interacting MSAP

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    10980459..11053357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5M7D4.1 GenPept UniProtKB/Swiss-Prot:Q5M7D4

Gene LinkOut

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