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OMD osteomodulin [ Homo sapiens (human) ]

Gene ID: 4958, updated on 4-Oct-2020

Summary

Official Symbol
OMDprovided by HGNC
Official Full Name
osteomodulinprovided by HGNC
Primary source
HGNC:HGNC:8134
See related
Ensembl:ENSG00000127083 MIM:618926
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OSAD; SLRR2C
Expression
Broad expression in heart (RPKM 10.0), fat (RPKM 8.3) and 20 other tissues See more
Orthologs

Genomic context

See OMD in Genome Data Viewer
Location:
9q22.31
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (92412380..92424471, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (95176527..95186836, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene chromosome 16 open reading frame 70 pseudogene Neighboring gene centromere protein P Neighboring gene osteoglycin Neighboring gene asporin Neighboring gene extracellular matrix protein 2 Neighboring gene microRNA 4670

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
keratan sulfate biosynthetic process TAS
Traceable Author Statement
more info
 
keratan sulfate catabolic process TAS
Traceable Author Statement
more info
 
regulation of bone mineralization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi lumen TAS
Traceable Author Statement
more info
 
collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome HDA PubMed 
extracellular region TAS
Traceable Author Statement
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lysosomal lumen TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
osteomodulin
Names
KSPG osteomodulin
keratan sulfate proteoglycan osteomodulin
osteoadherin proteoglycan

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_005014.3NP_005005.1  osteomodulin precursor

    See identical proteins and their annotated locations for NP_005005.1

    Status: VALIDATED

    Source sequence(s)
    AL137848
    Consensus CDS
    CCDS6696.1
    UniProtKB/Swiss-Prot
    Q99983
    Related
    ENSP00000364700.4, ENST00000375550.4
    Conserved Domains (2) summary
    sd00033
    Location:94116
    LRR_RI; leucine-rich repeat [structural motif]
    cl26018
    Location:68305
    NEL; C-terminal novel E3 ligase, LRR-interacting

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    92412380..92424471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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