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Omd osteomodulin [ Mus musculus (house mouse) ]

Gene ID: 27047, updated on 1-Mar-2024

Summary

Official Symbol
Omdprovided by MGI
Official Full Name
osteomodulinprovided by MGI
Primary source
MGI:MGI:1350918
See related
Ensembl:ENSMUSG00000048368 AllianceGenome:MGI:1350918
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
OSAD; SLRR2C
Summary
Predicted to be involved in regulation of bone mineralization. Predicted to act upstream of or within cell adhesion. Located in extracellular matrix. Orthologous to human OMD (osteomodulin). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Omd in Genome Data Viewer
Location:
13 A5; 13 25.33 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (49735938..49746088)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (49582462..49592612)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene centromere protein P Neighboring gene extracellular matrix protein 2, female organ and adipocyte specific Neighboring gene asporin Neighboring gene STARR-seq mESC enhancer starr_34480 Neighboring gene osteoglycin Neighboring gene STARR-positive B cell enhancer ABC_E1463 Neighboring gene nucleolar protein 8 Neighboring gene predicted gene, 53786

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (5) 

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
osteomodulin
Names
KSPG osteomodulin
keratan sulfate proteoglycan osteomodulin
osteoadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360708.1NP_001347637.1  osteomodulin precursor

    Status: VALIDATED

    Source sequence(s)
    AC160978
    Consensus CDS
    CCDS26504.1
    UniProtKB/Swiss-Prot
    O35103
    UniProtKB/TrEMBL
    Q501L5
    Related
    ENSMUSP00000065706.8, ENSMUST00000065494.8
    Conserved Domains (2) summary
    PRK15370
    Location:68302
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:94116
    LRR_RI; leucine-rich repeat [structural motif]
  2. NM_012050.3NP_036180.1  osteomodulin precursor

    See identical proteins and their annotated locations for NP_036180.1

    Status: VALIDATED

    Source sequence(s)
    AC160978
    Consensus CDS
    CCDS26504.1
    UniProtKB/Swiss-Prot
    O35103
    UniProtKB/TrEMBL
    Q501L5
    Related
    ENSMUSP00000152066.2, ENSMUST00000221170.2
    Conserved Domains (2) summary
    PRK15370
    Location:68302
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:94116
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    49735938..49746088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)