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tfg trafficking from ER to golgi regulator [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 493334, updated on 17-Aug-2024

Summary

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Official Symbol
tfgprovided by Xenbase
Official Full Name
trafficking from ER to golgi regulatorprovided by Xenbase
Primary source
Xenbase:XB-GENE-960556
See related
Ensembl:ENSXETG00000013350
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tf6; xtfg; tfg-a; tfg-b; trkt3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (105571884..105593763, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (101982330..102005131, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene interphotoreceptor matrix proteoglycan 2 Neighboring gene ABI family member 3 binding protein Neighboring gene gem nuclear organelle associated protein 8 Neighboring gene glycoprotein M6B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89763

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within swimming behavior IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein TFG
Names
trk-fused

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007961.2 → NP_001007962.2  protein TFG

    Status: PROVISIONAL

    Source sequence(s)
    CT030078
    UniProtKB/TrEMBL
    A0A803JLX2, A0A8J0PF12
    Conserved Domains (2) summary
    cd06401
    Location:11 → 91
    PB1_TFG; The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in ...
    PRK07764
    Location:190 → 378
    PRK07764; DNA polymerase III subunits gamma and tau; Validated

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    105571884..105593763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956810.3 → XP_012812264.1  protein TFG isoform X1

    UniProtKB/TrEMBL
    A0A803JLX2, F6ZH27
    Related
    ENSXETP00000029268.4, ENSXETT00000029268.5
    Conserved Domains (2) summary
    cd06401
    Location:11 → 91
    PB1_TFG; The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in ...
    PRK10263
    Location:151 → 349
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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