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NSF N-ethylmaleimide sensitive factor, vesicle fusing ATPase [ Homo sapiens (human) ]

Gene ID: 4905, updated on 24-Nov-2020

Summary

Official Symbol
NSFprovided by HGNC
Official Full Name
N-ethylmaleimide sensitive factor, vesicle fusing ATPaseprovided by HGNC
Primary source
HGNC:HGNC:8016
See related
Ensembl:ENSG00000073969 MIM:601633
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SKD2; SEC18
Expression
Broad expression in brain (RPKM 113.7), colon (RPKM 17.6) and 20 other tissues See more
Orthologs

Genomic context

See NSF in Genome Data Viewer
Location:
17q21.31
Exon count:
21
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (46590669..46757464)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (44668035..44834830)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 37 member A2 Neighboring gene ADP ribosylation factor like GTPase 17A Neighboring gene RNA, 7SL, cytoplasmic 199, pseudogene Neighboring gene family with sequence similarity 215 member B Neighboring gene vesicle-associated membrane protein 5-like Neighboring gene Sharpr-MPRA regulatory region 12503 Neighboring gene ribosomal protein S7 pseudogene 11 Neighboring gene ZFP161 motif-containing MPRA enhancer 249 Neighboring gene Wnt family member 3 Neighboring gene uncharacterized LOC101929777

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.
GeneReviews: Not available
Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.
GeneReviews: Not available
Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.
GeneReviews: Not available
Genome-wide association study reveals genetic risk underlying Parkinson's disease.
GeneReviews: Not available

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env Tandem affinity purification and mass spectrometry analysis identify N-ethylmaleimide-sensitive factor (NSF), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
Envelope surface glycoprotein gp160, precursor env NSF-DN disrupts HIV-1 Env glycoprotein processing and virion infectivity PubMed
Gag-Pol gag-pol Tandem affinity purification and mass spectrometry analysis identify N-ethylmaleimide-sensitive factor (NSF), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
Nef nef Tandem affinity purification and mass spectrometry analysis identify N-ethylmaleimide-sensitive factor (NSF), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
Pr55(Gag) gag Tandem affinity purification and mass spectrometry analysis identify N-ethylmaleimide-sensitive factor (NSF), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
gag NSF mutant E329Q (NSF-DN), defective in ATP hydrolysis, inhibits virus particle production by disrupting Gag-membrane localization PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
ATPase activity TAS
Traceable Author Statement
more info
 
PDZ domain binding IPI
Inferred from Physical Interaction
more info
PubMed 
SNARE binding ISS
Inferred from Sequence or Structural Similarity
more info
 
ionotropic glutamate receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
 
protein-containing complex binding IDA
Inferred from Direct Assay
more info
PubMed 
protein-containing complex binding ISS
Inferred from Sequence or Structural Similarity
more info
 
small GTPase binding ISS
Inferred from Sequence or Structural Similarity
more info
 
syntaxin-1 binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
COPII vesicle coating TAS
Traceable Author Statement
more info
 
Golgi to plasma membrane protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi vesicle docking IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SNARE complex disassembly ISS
Inferred from Sequence or Structural Similarity
more info
 
endoplasmic reticulum to Golgi vesicle-mediated transport TAS
Traceable Author Statement
more info
 
exocytosis TAS
Traceable Author Statement
more info
PubMed 
intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular protein transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
plasma membrane fusion TAS
Traceable Author Statement
more info
PubMed 
positive regulation of protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of receptor recycling IDA
Inferred from Direct Assay
more info
PubMed 
potassium ion transport IEA
Inferred from Electronic Annotation
more info
 
regulation of exocytosis ISS
Inferred from Sequence or Structural Similarity
more info
 
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum TAS
Traceable Author Statement
more info
 
vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
Golgi stack IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi stack ISS
Inferred from Sequence or Structural Similarity
more info
 
cytosol IDA
Inferred from Direct Assay
more info
 
cytosol TAS
Traceable Author Statement
more info
 
dendritic shaft ISS
Inferred from Sequence or Structural Similarity
more info
 
lysosomal membrane HDA PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
postsynaptic density ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
vesicle-fusing ATPase
Names
N-ethylmaleimide-sensitive factor-like protein
N-ethylmaleimide-sensitive fusion protein
NEM-sensitive fusion protein
epididymis secretory sperm binding protein
vesicular-fusion protein NSF
NP_006169.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006178.4NP_006169.2  vesicle-fusing ATPase

    See identical proteins and their annotated locations for NP_006169.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the protein.
    Source sequence(s)
    AK226078, BC030613, DB460965
    Consensus CDS
    CCDS42354.1
    UniProtKB/Swiss-Prot
    P46459
    Related
    ENSP00000381293.4, ENST00000398238.8
    Conserved Domains (4) summary
    smart00382
    Location:538670
    AAA; ATPases associated with a variety of cellular activities
    smart01073
    Location:683
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    COG0464
    Location:142490
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam02933
    Location:111159
    CDC48_2; Cell division protein 48 (CDC48), domain 2

RNA

  1. NR_040116.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks a coding exon compared to variant 1. This results in a frameshift and premature stop codon; the transcript is a candidate for nonsense-mediated decay (NMD) and thus is represented without protein annotation.
    Source sequence(s)
    AK294001, BC013314, DB460965

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    46590669..46757464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_167251.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    1576739..1743341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_187663.1 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    1110346..1276876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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