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CHDH choline dehydrogenase [ Canis lupus familiaris (dog) ]

Gene ID: 484723, updated on 5-Mar-2024

Summary

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Official Symbol
CHDHprovided by VGNC
Official Full Name
choline dehydrogenaseprovided by VGNC
Primary source
VGNC:VGNC:39208
See related
Ensembl:ENSCAFG00845027411
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CHDH in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (36425188..36463249)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (36088356..36126155)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (36442996..36480855)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (35866830..35904754)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (36225474..36263299)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091314 Neighboring gene actin related protein 8 Neighboring gene interleukin 17 receptor B Neighboring gene calcium voltage-gated channel subunit alpha1 D Neighboring gene uncharacterized LOC111091442

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline dehydrogenase, mitochondrial; LOW QUALITY PROTEIN: choline dehydrogenase, mitochondrial
XP_038282551.1
XP_038310844.1
XP_038358442.1
XP_038421280.1
XP_038485310.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    36425188..36463249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038426623.1 → XP_038282551.1  choline dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8P0P5F7
    Related
    ENSCAFP00845037866.1, ENSCAFT00845048276.1
    Conserved Domains (1) summary
    PRK02106
    Location:111 → 665
    PRK02106; choline dehydrogenase; Validated

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    35866830..35904754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038502514.1 → XP_038358442.1  choline dehydrogenase, mitochondrial isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    36225474..36263299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038629382.1 → XP_038485310.1  LOW QUALITY PROTEIN: choline dehydrogenase, mitochondrial isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    36442996..36480855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038565352.1 → XP_038421280.1  choline dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8P0P5F7
    Conserved Domains (1) summary
    PRK02106
    Location:111 → 665
    PRK02106; choline dehydrogenase; Validated

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36088356..36126155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038454916.1 → XP_038310844.1  choline dehydrogenase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8P0P5F7
    Conserved Domains (1) summary
    PRK02106
    Location:128 → 682
    PRK02106; choline dehydrogenase; Validated
Nucleotide Protein
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