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EFHC2 EF-hand domain containing 2 [ Canis lupus familiaris (dog) ]

Gene ID: 480888, updated on 17-Aug-2024

Summary

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Official Symbol
EFHC2provided by VGNC
Official Full Name
EF-hand domain containing 2provided by VGNC
Primary source
VGNC:VGNC:40224
See related
Ensembl:ENSCAFG00845027895
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (38222098..38417403, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (25361813..25556979, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (38341240..38536547, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (38262643..38457722, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (38245996..38437899, complement)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene norrin cystine knot growth factor NDP Neighboring gene mitochondrial import receptor subunit TOM20 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene putative deoxyribonuclease TATDN2 Neighboring gene ragulator complex protein LAMTOR5-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EF-hand domain-containing family member C2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    38222098..38417403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038449806.1 → XP_038305734.1  EF-hand domain-containing family member C2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LV62, A0A8C0SLJ9
    Related
    ENSCAFP00845038650.1, ENSCAFT00845049249.1
    Conserved Domains (2) summary
    smart00676
    Location:75 → 182
    DM10; Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases
    pfam06565
    Location:418 → 529
    DUF1126; DUF1126 PH-like domain

  2. XM_038449808.1 → XP_038305736.1  EF-hand domain-containing family member C2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LSJ4, A0A8C0LV62
    Conserved Domains (2) summary
    pfam06565
    Location:294 → 405
    DUF1126; DUF1126 PH-like domain
    cl26962
    Location:2 → 58
    DUF1126; DUF1126 PH-like domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    38262643..38457722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038523261.1 → XP_038379189.1  EF-hand domain-containing family member C2 isoform X1

    Conserved Domains (2) summary
    smart00676
    Location:75 → 182
    DM10; Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases
    pfam06565
    Location:418 → 529
    DUF1126; DUF1126 PH-like domain

  2. XM_038523262.1 → XP_038379190.1  EF-hand domain-containing family member C2 isoform X2

    Conserved Domains (2) summary
    pfam06565
    Location:294 → 405
    DUF1126; DUF1126 PH-like domain
    cl26962
    Location:2 → 58
    DUF1126; DUF1126 PH-like domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    38245996..38437899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038651741.1 → XP_038507669.1  EF-hand domain-containing family member C2 isoform X1

    Conserved Domains (2) summary
    smart00676
    Location:75 → 182
    DM10; Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases
    pfam06565
    Location:418 → 529
    DUF1126; DUF1126 PH-like domain

  2. XM_038651742.1 → XP_038507670.1  EF-hand domain-containing family member C2 isoform X2

    Conserved Domains (2) summary
    pfam06565
    Location:294 → 405
    DUF1126; DUF1126 PH-like domain
    cl26962
    Location:2 → 58
    DUF1126; DUF1126 PH-like domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    38341240..38536547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038587226.1 → XP_038443154.1  EF-hand domain-containing family member C2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LV62, A0A8C0SLJ9
    Conserved Domains (2) summary
    smart00676
    Location:75 → 182
    DM10; Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases
    pfam06565
    Location:418 → 529
    DUF1126; DUF1126 PH-like domain

  2. XM_038587227.1 → XP_038443155.1  EF-hand domain-containing family member C2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LSJ4, A0A8C0LV62
    Conserved Domains (2) summary
    pfam06565
    Location:294 → 405
    DUF1126; DUF1126 PH-like domain
    cl26962
    Location:2 → 58
    DUF1126; DUF1126 PH-like domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25361813..25556979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038464853.1 → XP_038320781.1  EF-hand domain-containing family member C2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LV62, A0A8C0SLJ9
    Conserved Domains (2) summary
    smart00676
    Location:75 → 182
    DM10; Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases
    pfam06565
    Location:418 → 529
    DUF1126; DUF1126 PH-like domain

  2. XM_022416016.2 → XP_022271724.1  EF-hand domain-containing family member C2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LSJ4, A0A8C0LV62
    Conserved Domains (2) summary
    pfam06565
    Location:294 → 405
    DUF1126; DUF1126 PH-like domain
    cl26962
    Location:2 → 58
    DUF1126; DUF1126 PH-like domain
Nucleotide Protein
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