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ELOC elongin C [ Canis lupus familiaris (dog) ]

Gene ID: 477914, updated on 17-Aug-2024

Summary

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Official Symbol
ELOCprovided by VGNC
Official Full Name
elongin Cprovided by VGNC
Primary source
VGNC:VGNC:40317
See related
Ensembl:ENSCAFG00845028788
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
TCEB1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 29
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 29 NC_051833.1 (22562889..22587095, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 29 NC_006611.4 (22717298..22741493, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 29 NC_049250.1 (22940162..22964613, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 29 NC_049289.1 (22621622..22646088, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 29 NC_049770.1 (22657010..22681258, complement)

Chromosome 29 - NC_051833.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093196 Neighboring gene MAP kinase-interacting serine/threonine-protein kinase 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111093216 Neighboring gene transmembrane protein 70 Neighboring gene lymphocyte antigen 96 Neighboring gene junctophilin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of elongin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor B polypeptide 1; elongin-C
Names
transcription elongation factor B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051833.1 Reference ROS_Cfam_1.0

    Range
    22562889..22587095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038441412.1 → XP_038297340.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Related
    ENSCAFP00845039888.1, ENSCAFT00845050880.1
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  2. XM_038441414.1 → XP_038297342.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  3. XM_038441413.1 → XP_038297341.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049289.1 Alternate UMICH_Zoey_3.1

    Range
    22621622..22646088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515992.1 → XP_038371920.1  elongin-C

    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  2. XM_038515994.1 → XP_038371922.1  elongin-C

    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  3. XM_038515993.1 → XP_038371921.1  elongin-C

    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049770.1 Alternate UNSW_CanFamBas_1.0

    Range
    22657010..22681258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038643801.1 → XP_038499729.1  elongin-C

    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  2. XM_038643803.1 → XP_038499731.1  elongin-C

    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  3. XM_038643802.1 → XP_038499730.1  elongin-C

    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049250.1 Alternate UU_Cfam_GSD_1.0

    Range
    22940162..22964613 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038579551.1 → XP_038435479.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  2. XM_038579553.1 → XP_038435481.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  3. XM_038579552.1 → XP_038435480.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006611.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22717298..22741493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_535104.7 → XP_535104.1  elongin-C

    See identical proteins and their annotated locations for XP_535104.1

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  2. XM_022412237.2 → XP_022267945.1  elongin-C

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  3. XM_005638049.4 → XP_005638106.1  elongin-C

    See identical proteins and their annotated locations for XP_005638106.1

    UniProtKB/TrEMBL
    A0A8C0JX38, A0A8C0R2Z3, A0A8C0SXC4, A0A8I3PYQ7
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins
Nucleotide Protein
Heading Accession and Version

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