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GATA4 GATA binding protein 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 472698, updated on 2-Nov-2023

Summary

Official Symbol
GATA4provided by VGNC
Official Full Name
GATA binding protein 4provided by VGNC
Primary source
VGNC:VGNC:50427
Locus tag
CK820_G0040355
See related
Ensembl:ENSPTRG00000019993
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See GATA4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (20812705..20895724)

Chromosome 8 - NC_072406.1Genomic Context describing neighboring genes Neighboring gene BLK proto-oncogene, Src family tyrosine kinase Neighboring gene uncharacterized LOC104004257 Neighboring gene putative uncharacterized protein C8orf49 Neighboring gene nei like DNA glycosylase 2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072406.1 Chromosome 8 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
transcription factor GATA-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072406.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    20812705..20895724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016959097.3XP_016814586.1  transcription factor GATA-4 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SFW5, A0A2I3TK78, A0A2J8Q9B5, A0A6D2WMY4
    Related
    ENSPTRP00000075865.1
    Conserved Domains (2) summary
    cd00202
    Location:271322
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1205
    GATA-N; GATA-type transcription activator, N-terminal
  2. XM_009440250.4XP_009438525.2  transcription factor GATA-4 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SFW5, A0A2I3TK78, A0A2J8Q9B5, A0A6D2WMY4
    Conserved Domains (2) summary
    cd00202
    Location:271322
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1205
    GATA-N; GATA-type transcription activator, N-terminal
  3. XM_009440249.4XP_009438524.2  transcription factor GATA-4 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TK78, A0A2J8Q9B1, A0A6D2VWI2, H2QVR5
    Related
    ENSPTRP00000034232.5
    Conserved Domains (2) summary
    cd00202
    Location:270321
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1205
    GATA-N; GATA-type transcription activator, N-terminal