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RXRA retinoid X receptor alpha [ Pan troglodytes (chimpanzee) ]

Gene ID: 464834, updated on 10-Oct-2024

Summary

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Official Symbol
RXRAprovided by VGNC
Official Full Name
retinoid X receptor alphaprovided by VGNC
Primary source
VGNC:VGNC:13957
Locus tag
CK820_G0012077
See related
Ensembl:ENSPTRG00000021527
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See RXRA in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 11 NC_072409.2 (3986617..4101281, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (114767433..114882097)

Chromosome 11 - NC_072409.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134807598 Neighboring gene uncharacterized LOC107976880 Neighboring gene uncharacterized LOC104008046 Neighboring gene uncharacterized LOC134807696 Neighboring gene uncharacterized LOC129135987 Neighboring gene uncharacterized LOC104008044 Neighboring gene uncharacterized LOC112204407

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    3986617..4101281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016962037.3 → XP_016817526.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A2J8NA56, A0A2J8NA59, A0A6D2VX23, H2R395
    Related
    ENSPTRP00000045122.3
    Conserved Domains (3) summary
    cd06943
    Location:229 → 440
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:133 → 209
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:17 → 126
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_054658493.2 → XP_054514468.1  retinoic acid receptor RXR-alpha isoform X3

  3. XM_054658492.2 → XP_054514467.1  retinoic acid receptor RXR-alpha isoform X3

  4. XM_054658490.2 → XP_054514465.1  retinoic acid receptor RXR-alpha isoform X2

  5. XM_063787438.1 → XP_063643508.1  retinoic acid receptor RXR-alpha isoform X3

  6. XM_063787437.1 → XP_063643507.1  retinoic acid receptor RXR-alpha isoform X3

  7. XM_054658491.2 → XP_054514466.1  retinoic acid receptor RXR-alpha isoform X3

  8. XM_016962038.4 → XP_016817527.1  retinoic acid receptor RXR-alpha isoform X4

    Conserved Domains (3) summary
    cd06943
    Location:132 → 343
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:36 → 112
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 29
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
Nucleotide Protein
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