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RXRA retinoid X receptor alpha [ Pan troglodytes (chimpanzee) ]

Gene ID: 464834, updated on 2-Nov-2023

Summary

Official Symbol
RXRAprovided by VGNC
Official Full Name
retinoid X receptor alphaprovided by VGNC
Primary source
VGNC:VGNC:13957
Locus tag
CK820_G0012077
See related
Ensembl:ENSPTRG00000021527
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See RXRA in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (114767433..114882097)

Chromosome 9 - NC_072407.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112204407 Neighboring gene uncharacterized LOC104008044 Neighboring gene uncharacterized LOC129135987 Neighboring gene uncharacterized LOC104008046 Neighboring gene uncharacterized LOC107976880 Neighboring gene collagen type V alpha 1 chain

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072407.1 Chromosome 9 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
retinoic acid receptor RXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072407.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    114767433..114882097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016962037.3XP_016817526.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A2J8NA56, A0A2J8NA59, A0A6D2VX23, H2R395
    Related
    ENSPTRP00000045122.3
    Conserved Domains (3) summary
    cd06943
    Location:229440
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:133209
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:17126
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
  2. XM_054658493.1XP_054514468.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2J8NA59
  3. XM_054658492.1XP_054514467.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2J8NA59
  4. XM_054658490.1XP_054514465.1  retinoic acid receptor RXR-alpha isoform X2

    UniProtKB/TrEMBL
    A0A2J8NA59
  5. XM_054658491.1XP_054514466.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2J8NA59
  6. XM_016962038.3XP_016817527.1  retinoic acid receptor RXR-alpha isoform X4

    Conserved Domains (3) summary
    cd06943
    Location:132343
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:36112
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:129
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1