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SNRPF small nuclear ribonucleoprotein polypeptide F [ Pan troglodytes (chimpanzee) ]

Gene ID: 452143, updated on 17-Aug-2024

Summary

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Official Symbol
SNRPFprovided by VGNC
Official Full Name
small nuclear ribonucleoprotein polypeptide Fprovided by VGNC
Primary source
VGNC:VGNC:57789
Locus tag
CK820_G0016204
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (102704480..102711738)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (101324956..101332214)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107967605 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107967606 Neighboring gene coiled-coil domain containing 38 Neighboring gene amidohydrolase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    102704480..102711738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009426036.4 → XP_009424311.1  small nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for XP_009424311.1

    UniProtKB/TrEMBL
    A0A2I3T3G8, A0A2J8N0P6, A0A8I3B114, K6ZHM2, K7C7A2
    Conserved Domains (1) summary
    cd01722
    Location:6 → 74
    Sm_F; Sm protein F
Nucleotide Protein
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