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CTNNB1 catenin beta 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 450183, updated on 10-Oct-2024

Summary

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Official Symbol
CTNNB1provided by VGNC
Official Full Name
catenin beta 1provided by VGNC
Primary source
VGNC:VGNC:6197
Locus tag
CK820_G0005354
See related
Ensembl:ENSPTRG00000023062
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CTNNB1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (45212233..45253211)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (45211787..45252877)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134809437 Neighboring gene uncharacterized LOC134809520 Neighboring gene unc-51 like kinase 4 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene V-type proton ATPase subunit e 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elevated gene expression levels distinguish human from non-human primate brains. Cáceres M, et al. Proc Natl Acad Sci U S A, 2003 Oct 28. PMID 14557539, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin beta-1
Names
catenin (cadherin-associated protein), beta 1, 88kDa
catenin beta 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    45212233..45253211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063805620.1 → XP_063661690.1  catenin beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SBG5, A0A2J8PB43, A0A6D2XCK0

  2. XM_063805621.1 → XP_063661691.1  catenin beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SBG5, A0A2J8PB43, A0A6D2XCK0

  3. XM_063805622.1 → XP_063661692.1  catenin beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SBG5, A0A2J8PB43, A0A6D2XCK0

  4. XM_016940796.4 → XP_016796285.1  catenin beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PB47, A0A6D2WZ75, H2R2U1, K7BHG5
    Conserved Domains (4) summary
    smart00185
    Location:350 → 390
    ARM; Armadillo/beta-catenin-like repeats
    COG5064
    Location:142 → 431
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:583 → 622
    Arm; Armadillo/beta-catenin-like repeat

  5. XM_016940799.4 → XP_016796288.1  catenin beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PB47, A0A6D2WZ75, H2R2U1, K7BHG5
    Conserved Domains (4) summary
    smart00185
    Location:350 → 390
    ARM; Armadillo/beta-catenin-like repeats
    COG5064
    Location:142 → 431
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:583 → 622
    Arm; Armadillo/beta-catenin-like repeat

  6. XM_063805619.1 → XP_063661689.1  catenin beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PB47, A0A6D2WZ75, H2R2U1

  7. XM_063805618.1 → XP_063661688.1  catenin beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PB47, A0A6D2WZ75, H2R2U1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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