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pnpla3.L patatin like phospholipase domain containing 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447273, updated on 17-Aug-2024

Summary

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Official Symbol
pnpla3.L
Official Full Name
patatin like phospholipase domain containing 3 L homeolog
Primary source
Xenbase:XB-GENE-5855148
Locus tag
XELAEV_18016670mg
See related
EnsemblRapid:ENSXLAG00005009460
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pnpla3
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 3L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (3656903..3668673, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (2892750..3322226, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene parvin beta L homeolog Neighboring gene SAMM50 sorting and assembly machinery component L homeolog Neighboring gene sulfotransferase family 4A member 1 L homeolog Neighboring gene metallophosphoesterase domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC86401

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables triglyceride lipase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
patatin like phospholipase domain containing 3 L homeolog
Names
patatin-like phospholipase domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093980.1 → NP_001087449.1  patatin like phospholipase domain containing 3 L homeolog

    See identical proteins and their annotated locations for NP_001087449.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079804
    UniProtKB/TrEMBL
    Q68FI5
    Related
    ENSXLAP00005027661.1, ENSXLAT00005028395.1
    Conserved Domains (1) summary
    cd07220
    Location:4 → 253
    Pat_PNPLA2; Patatin-like phospholipase domain containing protein 2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    3656903..3668673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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