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psmc5.L proteasome 26S subunit, ATPase 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443908, updated on 17-Aug-2024

Summary

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Official Symbol
psmc5.L
Official Full Name
proteasome 26S subunit, ATPase 5 L homeolog
Primary source
Xenbase:XB-GENE-999933
Locus tag
XELAEV_18043364mg
See related
EnsemblRapid:ENSXLAG00005036612
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sug1; XSUG1; psmc5; sug-1; tbp10
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (7350984..7361900, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (7323272..7334273, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108701985 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 L homeolog Neighboring gene uncharacterized LOC121398147 Neighboring gene sodium channel, voltage gated, type IV alpha subunit L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Wnt signalling regulates paxillin ubiquitination essential for mesodermal cell motility. Iioka H, et al. Nat Cell Biol, 2007 Jul. PMID 17558393
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53028, MGC80185

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasome 26S subunit, ATPase 5 L homeolog
Names
proteasome (prosome, macropain) 26S subunit, ATPase, 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092013.1 → NP_001085482.1  proteasome 26S subunit, ATPase 5 L homeolog

    See identical proteins and their annotated locations for NP_001085482.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045221
    UniProtKB/TrEMBL
    A0A974BSR7, A0A974BXD4, Q6GQB7
    Related
    ENSXLAP00005109603.1, ENSXLAT00005111805.1
    Conserved Domains (2) summary
    COG1222
    Location:16 → 413
    RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
    pfam00004
    Location:195 → 327
    AAA; ATPase family associated with various cellular activities (AAA)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7350984..7361900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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