jade1.S jade family PHD finger 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: jade1.S
Official Full Name: jade family PHD finger 1 S homeolog
Primary source: Xenbase:XB-GENE-949218
Locus tag: XELAEV_18009306mg
See related: EnsemblRapid:ENSXLAG00005002915
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: jade1; phf17
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Genomic context

Location:: chromosome: 1S

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1S	NC_054372.1 (52626969..52671928, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1S	NC_030725.1 (52274837..52320046, complement)

Chromosome 1S - NC_054372.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cell projection	IEA Inferred from Electronic Annotation more info
located_in chromosome	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
part_of histone acetyltransferase complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein Jade-1

Names: PHD finger protein 17; jade family PHD finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091971.1 → NP_001085440.1 protein Jade-1

See identical proteins and their annotated locations for NP_001085440.1

Status: PROVISIONAL

Source sequence(s)

BC072750

UniProtKB/Swiss-Prot

Q6GQJ2

UniProtKB/TrEMBL

A0A974I0M4

Related

ENSXLAP00005008713.1, ENSXLAT00005008839.1

Conserved Domains (3) summary

cd15679
Location:202 → 247

PHD_JADE1; PHD finger found in protein Jade-1 and similar proteins

cd15704
Location:252 → 369

ePHD_JADE1; Extended PHD finger found in protein Jade-1 and similar proteins

pfam10513
Location:102 → 177

EPL1; Enhancer of polycomb-like

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

52626969..52671928 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)